Protein

View in Explore
Genbank accession
YP_010110219.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNATRQTNTFAGGLNMDVDYSVLKDNQYIYAENIRILTNEGSSFAAMQNIEGFLMCRPSSNLSGETIIHVTTVRDWAIVFTKVNGTNNNNVYRIDFSRSQEEPIVTKVVTNRPLDIEVSSSNVAAISSVCRWEASNNVKVYWADGHSQIKVINVDDDHISSNSSITSDTIVMLPKATLPPFEFNGFGTGSLESGMIQYCYQLFKVRGTESAISPLTPLYHLSDGDQKTNYNAVKGSSKGQNTGKSIKLQVRNNSTGFDRLRIISLFYKAKNEVPVISIVDDIVIGTGSVINYEDKGGSLVSELSIDEFNSLANYTFVPEVIESKDNRLFAANLTEETWDVEYDARAFRANSSGNVLLLSNSGSSLNFALSALTTTNIPKDHDCICPFNVDGSAYKYTTSPTGGYIQGGKGKNVSYRFITTDLLEDASTTSRGMIDEEFTFNSSSRSLTSLGINYEGNDKSNTISLSSGNKIPNYSNAEIESKVKGYMRDEIYRFGIVLYNKQGLASPVHWIGDIRMPSNKDTGYKFFTSNEASDYGSNLSVVTKPLGIEFEVKNLPSDVVRYEIVRCERTLSDRTILAQGVVSCITNYDRDSNILTPFPYLAYSNKHGYYAKTHNDGDFQYTFNLSDTQSNNYFMFVSPEIAINRENADALIDKFQTVEKVGIMTSPITADGNWGITDGSLKVLANARSIKYDGSTIKPTKSLGGQSSNGYVANGAIVINNDDFYSALLAKYYGLYVENGVQSAAIESAKYAGPSSPWLTNGDQPWYNAEAITIGDKVYYNWVWDNIRTAGDSEVDKTDANNVRKYGPHGICAIFKSDNMVANIPLAVSTSSYRYVNAVVLCNIKQSVNAYGGNSYSAIQNSVYITTGASAESSVSTVLCYGGDTYLNIFDYNNCMFSYNTDDYYNNKANRLFLGAFIPCESSVNLALTHADSSINRTYQAGDGYANHFVEDDIITVGDLYTQNTPSYAYNDAYSAQPNAKKFVAKSIYNIDNLLTDTRIISSELKTNNEVTDSWTKFKVANYLDVDTRFGPINDMKLFKNNLVFWQTDAFGTVAVNERSIITDNNPGTLTLGTGGILDRYDYFTTMNGESPNQLRANTQSDSTVYWYDSKRNEICGFNGQLQTVSKLKGVQSYLNKNKDLFKKDPIAVYDKKYNEVLFTLGDKTLAFNEQLGVFTSFYNYNPDYYAEFSDKLYLFKSLKLFKYNGGEQADLDSDKAKVSEIEFVVNKDYPQTKTFDNVEYGGDFTTDTNFDLILFTTKRQTSETLTSEDIDYREDTYKFAIPRNSLKLNEVEQLANKSYKDRMKGKYLICNYKYDCNGGNEFKVPYISTAYRYSMI
Physico‐chemical
properties
protein length:1337 AA
molecular weight: 149245,06770 Da
isoelectric point:5,06068
aromaticity:0,11892
hydropathy:-0,41481

Domains

Domains [InterPro]
IPR057889
STR
4–1198
IPR057889 IPR057888
DC_1659
RBD
1181–1337
DC_1659
YP_010110219.1
1 1337
Architecture
STR
RBD
STR 4-1198 | RBD 1199-1337
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010110219.1
1 1337
Domain Start End Length (AA) Confidence
N-terminal 1 291 291 0,4642
Central domain 292 490 200 0,7626
C-terminal 491 1337 846 0,3604
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-291
Central
292-490
C-terminal
491-1337

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr50_1
[NCBI] 		2772059 Uroviricota > Caudoviricetes > Crassvirales > Boorivirinae > Cohcovirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010110219.1 [NCBI]
Genbank nucleotide accession
NC_055868 [NCBI]
CDS location
range 84091 -> 88104
strand -
CDS
ATGAACGCTACTAGACAAACAAACACATTTGCTGGTGGACTTAACATGGATGTAGACTATTCTGTGTTAAAAGACAACCAGTACATATATGCAGAGAACATTCGAATATTAACGAATGAAGGATCTTCTTTTGCAGCAATGCAGAATATAGAAGGATTCTTAATGTGTAGACCTTCTTCAAATTTGTCTGGTGAAACTATTATACACGTTACCACAGTAAGAGATTGGGCGATTGTTTTTACTAAGGTTAATGGTACAAATAACAATAATGTCTATAGAATTGATTTTTCTAGATCCCAAGAGGAACCAATTGTAACAAAAGTAGTAACTAATAGACCTTTAGATATAGAAGTATCATCTAGCAACGTAGCTGCAATTAGTAGTGTATGTAGATGGGAAGCAAGTAATAATGTAAAAGTATATTGGGCAGATGGTCATTCACAAATTAAAGTAATCAATGTGGATGATGATCACATATCTAGTAATTCATCTATTACTTCGGATACTATAGTAATGCTACCAAAGGCTACATTACCTCCATTTGAATTTAATGGATTTGGAACAGGTAGTTTAGAATCTGGAATGATACAGTACTGTTATCAATTGTTTAAAGTAAGAGGTACAGAGTCTGCAATATCTCCACTTACCCCTCTTTATCATTTGAGTGACGGAGATCAAAAAACTAATTACAATGCTGTAAAAGGAAGTTCTAAAGGACAAAATACTGGTAAGTCCATAAAGTTACAAGTAAGAAACAATAGTACTGGATTTGATAGACTTAGAATAATCTCTTTATTCTATAAGGCAAAGAATGAGGTACCTGTAATATCTATAGTAGATGATATAGTTATTGGAACTGGTTCTGTAATAAACTATGAAGATAAAGGTGGTAGTTTAGTATCAGAATTAAGTATTGATGAATTTAATTCATTAGCTAATTACACATTTGTACCTGAAGTAATAGAATCTAAAGACAATAGGTTATTCGCTGCTAATCTTACTGAGGAAACGTGGGATGTAGAATATGATGCCAGAGCATTTAGAGCCAATTCATCTGGTAATGTACTATTACTATCTAATTCTGGTTCTTCATTAAATTTTGCTTTATCTGCGTTAACCACTACAAATATACCAAAGGATCATGATTGTATATGCCCATTTAATGTTGATGGTAGTGCTTATAAATACACTACTTCTCCAACAGGAGGATATATACAAGGTGGAAAGGGTAAGAACGTATCATATAGGTTTATTACTACGGACTTACTAGAAGATGCATCTACCACATCTAGAGGAATGATAGACGAAGAATTTACATTCAATTCTTCTTCAAGATCACTTACTAGTTTAGGTATCAACTATGAAGGTAATGATAAATCAAATACAATAAGCTTATCATCTGGTAACAAAATACCAAACTATTCTAATGCTGAAATAGAATCCAAAGTAAAAGGATATATGAGGGATGAGATTTATAGATTTGGTATAGTATTGTATAATAAGCAAGGTTTGGCATCACCAGTGCATTGGATAGGTGACATAAGAATGCCATCTAATAAAGATACAGGTTATAAGTTTTTTACTTCTAATGAGGCTAGTGATTATGGATCTAATTTATCAGTTGTTACTAAACCTCTTGGTATTGAATTTGAAGTAAAGAATTTACCATCAGACGTAGTAAGATATGAGATAGTTAGATGCGAAAGAACTCTATCTGATAGAACTATATTAGCTCAAGGAGTAGTAAGTTGTATTACAAATTATGACAGAGATTCTAACATCTTAACACCATTCCCATATCTAGCTTATTCAAATAAGCATGGTTACTATGCAAAGACTCATAACGATGGAGATTTTCAATATACTTTTAACTTATCAGATACGCAATCTAATAATTATTTCATGTTCGTGTCTCCAGAGATAGCGATTAACAGAGAAAATGCAGATGCGTTAATTGATAAGTTTCAAACAGTTGAAAAGGTAGGGATTATGACATCTCCTATTACTGCAGATGGTAACTGGGGTATTACAGATGGTTCTCTAAAAGTATTAGCAAATGCCAGATCTATAAAGTATGACGGTTCTACAATAAAACCAACTAAATCATTAGGAGGTCAATCTAGTAATGGTTATGTGGCTAATGGAGCCATAGTAATAAACAATGATGATTTTTATTCAGCGTTACTTGCTAAATACTATGGTTTATATGTTGAAAATGGTGTTCAATCTGCTGCAATAGAAAGTGCGAAATATGCAGGACCCAGTAGTCCTTGGTTAACAAATGGTGATCAACCTTGGTATAATGCTGAAGCAATTACTATTGGTGATAAAGTATATTATAACTGGGTGTGGGATAATATTAGAACTGCAGGAGACAGTGAAGTAGATAAGACTGATGCAAATAATGTTAGAAAATATGGTCCTCATGGAATATGTGCCATATTCAAGAGTGACAACATGGTTGCTAATATACCACTAGCTGTAAGTACTTCTAGTTACAGATATGTCAATGCAGTTGTTTTGTGTAATATAAAGCAAAGCGTAAATGCATATGGCGGTAATTCATACTCTGCTATACAGAATTCTGTATATATTACTACTGGTGCTAGCGCTGAATCTAGTGTTTCCACAGTACTGTGCTATGGTGGTGATACATATCTAAACATATTTGATTATAATAACTGTATGTTTAGTTATAATACAGACGATTATTATAACAATAAAGCAAATAGATTGTTCTTAGGGGCTTTCATACCATGCGAGTCAAGTGTTAATCTAGCGTTAACCCATGCTGATTCATCTATAAATAGAACTTATCAAGCTGGTGATGGATATGCTAATCACTTTGTAGAAGACGATATAATTACTGTTGGTGATTTATATACTCAGAACACTCCATCATATGCATACAATGATGCTTACTCTGCTCAACCTAATGCAAAAAAGTTTGTAGCTAAATCTATTTACAATATAGATAATTTATTAACAGATACTCGTATCATATCTTCAGAGCTTAAAACAAATAATGAAGTTACTGATTCATGGACAAAATTCAAAGTAGCCAATTATCTTGATGTAGATACTAGATTTGGACCAATTAATGATATGAAGTTATTTAAAAACAATCTAGTATTCTGGCAAACCGACGCTTTTGGCACAGTTGCAGTGAACGAACGTTCTATTATAACTGATAATAATCCCGGTACTCTTACTCTAGGTACTGGTGGTATACTAGATAGATATGACTATTTTACTACAATGAATGGTGAAAGTCCAAACCAGTTAAGAGCAAATACTCAATCAGATAGCACTGTGTACTGGTATGATAGTAAACGTAATGAGATATGTGGTTTTAATGGTCAATTACAAACAGTATCTAAATTAAAAGGAGTTCAATCTTATTTGAATAAGAATAAAGACTTGTTTAAAAAAGATCCTATTGCAGTATATGATAAGAAATACAATGAAGTTCTGTTTACTCTAGGAGATAAAACATTAGCGTTTAATGAACAATTAGGAGTATTTACTTCATTCTATAACTATAATCCAGACTATTATGCAGAGTTTAGTGATAAACTATATTTATTTAAATCATTGAAACTGTTTAAATATAATGGTGGTGAACAAGCTGATTTAGATTCTGACAAAGCAAAGGTATCTGAAATAGAATTTGTAGTTAACAAAGATTATCCACAAACCAAAACATTTGATAATGTTGAATATGGTGGTGATTTTACTACAGATACTAATTTTGATTTGATATTATTTACTACAAAAAGACAGACTAGTGAAACATTAACTAGTGAAGATATTGATTACAGGGAGGATACTTATAAATTTGCAATCCCTCGTAATTCTTTGAAGCTTAATGAAGTAGAACAACTGGCTAACAAATCATACAAAGATAGGATGAAAGGAAAATATCTTATCTGTAATTATAAGTATGATTGTAATGGTGGTAATGAATTTAAAGTACCATATATTAGTACAGCTTATAGATACTCAATGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4f2a375e4321978848059c64547b0784e4a15720a5ed49dc99352a5b682f3fdb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8109
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank