Protein

View in Explore
Genbank accession
BDA82394.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MPHLKAYDKEGNILAIGYNVTSDQGSVIIPNLKPHTKYPQGEFYVSWEGDNYESEKTVVPEFTTLESSYKEIIFYAKDILTIKPKTAYDIAVDNGFTGTEKEWVESIKGEPGEKGDTGSDYNVDFTLDANSSAPLKIHPSGNNFKLVDKVSADEMYVYQVAGNNYLRYFFKKNNGGSGYGETYELLRSQKVEPISNIVVYKEVKNPTTGTVTNLWNYTGTNSVERRVMPYKNYDKGKRYSNNGNTPIQSYQIDAGQSVSYTMQPTPSKKMNVAFYARGGYTSSEDFSVKIDGEVLQDLNIKNAPMQYTRIFEFITPPTDATYTLTIENKSAKGIYLSAINLFTLDEYKEQEVDSYVAYGQLDKTPFIDNAGANDYALKNLENNKLFGSYHGGETVESCKMEYVNNADLIKGVSLKSFSDIPVNKFYLSKNLSIRQESTLIQRANTYSVADFNTNGTLNFNFSYNVLEGATPIPLRDLWIGLTCTHSSFSKVKIPKRIDFGNTFTGETIFFPSTVGLCVQTTSDETQEIHIRHSRFKNTYVTTDHPQSVSDLEIYRKYYYAPIRSNTDKKVAPITFQFNKALDFYTI
Physico‐chemical
properties
protein length:586 AA
molecular weight: 66248,19890 Da
isoelectric point:5,68421
aromaticity:0,12799
hydropathy:-0,54113

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDA82394.1
1 586
Domain Start End Length (AA) Confidence
N-terminal 1 316 316 0,5167
Central domain 317 515 200 0,5079
C-terminal 516 586 70 0,6601
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-316
Central
317-515
C-terminal
516-586

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SsapH-Golestan-105-M
[NCBI] 		2872011 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus saprophyticus
[NCBI] 		29385 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDA82394.1 [NCBI]
Genbank nucleotide accession
LC648442.1 [NCBI]
CDS location
range 112877 -> 114637
strand +
CDS
ATGCCACATTTAAAAGCTTATGATAAAGAAGGTAATATACTAGCCATAGGTTATAATGTAACAAGTGACCAAGGGTCTGTTATCATACCTAACTTAAAACCACATACAAAATACCCTCAAGGGGAATTTTACGTTTCTTGGGAAGGGGATAACTATGAGTCAGAAAAAACAGTTGTTCCTGAATTTACTACCTTAGAATCTTCTTACAAGGAAATTATATTTTATGCTAAAGATATTTTAACAATTAAACCTAAAACAGCTTATGACATAGCTGTAGATAATGGATTTACAGGAACCGAAAAAGAATGGGTTGAATCTATTAAAGGTGAACCAGGAGAGAAAGGTGATACAGGTTCCGATTATAATGTAGATTTTACTTTAGATGCTAATAGCTCTGCACCACTTAAAATACATCCATCCGGCAATAATTTTAAATTAGTTGATAAAGTTAGTGCAGATGAAATGTATGTTTATCAAGTTGCCGGTAACAATTATTTAAGATACTTCTTCAAGAAAAACAACGGTGGTTCGGGGTACGGAGAAACATATGAATTATTAAGGTCTCAAAAAGTCGAACCAATTAGTAATATTGTTGTTTATAAAGAAGTTAAAAACCCAACAACTGGTACAGTAACAAATTTATGGAATTATACTGGAACTAATTCAGTTGAAAGACGTGTAATGCCATACAAAAACTATGACAAAGGAAAAAGATATTCAAATAATGGTAATACTCCAATTCAGTCATATCAAATAGATGCAGGACAATCTGTAAGTTATACAATGCAACCTACTCCGTCTAAAAAAATGAATGTTGCTTTTTATGCTAGAGGTGGTTATACAAGCAGTGAAGATTTTTCAGTAAAAATTGACGGTGAAGTTCTTCAAGACTTAAATATAAAAAATGCACCAATGCAATATACTAGAATTTTTGAATTCATAACACCTCCGACTGATGCAACTTATACACTTACTATTGAAAATAAAAGTGCTAAGGGTATCTATCTTTCAGCAATAAATCTTTTTACACTTGATGAATATAAAGAACAAGAGGTAGATTCGTATGTGGCATACGGTCAATTAGATAAAACACCATTTATTGATAATGCAGGTGCTAATGATTATGCTTTGAAAAATTTAGAAAATAATAAATTATTCGGTTCTTACCATGGAGGGGAAACCGTTGAATCTTGCAAAATGGAATATGTTAATAATGCTGATTTAATAAAAGGTGTATCACTGAAAAGTTTTAGTGATATCCCTGTAAATAAATTTTATTTAAGTAAGAATTTATCAATTAGACAAGAAAGTACACTTATTCAAAGAGCCAATACCTATTCGGTAGCTGATTTCAACACGAACGGTACTTTGAACTTTAATTTCAGTTATAATGTTTTAGAAGGTGCAACACCAATACCTTTAAGAGATTTATGGATAGGTTTAACGTGTACACATTCATCATTTAGTAAAGTGAAAATACCAAAGAGGATAGACTTTGGAAATACTTTTACTGGTGAAACGATATTTTTCCCTTCAACCGTAGGCTTGTGTGTTCAAACTACATCTGATGAAACACAAGAAATTCATATTAGACATAGTAGATTTAAAAACACATATGTCACTACTGACCACCCACAATCAGTTTCAGATTTAGAAATATATAGAAAATATTACTATGCACCGATAAGAAGTAACACAGATAAAAAAGTAGCACCTATAACATTCCAGTTCAATAAAGCATTAGATTTTTACACTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dfe49f27920a5372112aca9a2a474832bf58b8aebdc69a0d7273b31d33759533
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4564
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of phage genome Yazdi,M., Ghaemi,E.A., Shirzad-Aski,H., Mohebbi,A., Tabarraei,A., Sabzali,S. and Rafiee,M. 2013-08-01 — GenBank