Protein

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Genbank accession
YP_010656690.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MTATAEYNPATKILTVDGDGLPNPVSYGTFPNAYNPNLVTEQDFQHDFYYRGGTFGITRTFDDNTFTQNGYLIQIPLSPNDNSLLGSAIVPGDHVLFVFDEGTENELKQRFVYTGTTQTTTAGQFWRASDQYLELVVENPRLDYSGTYTYYDQRNGRISAPLGAIGVAANGVVFYNPSAGDGGNPPVGFHWNAHYENSPVNFGDDACGGHPEPTGQYHYHDTHFLDCWKENSIIASYNDYYGLSQYNGDNLRHPDSHSKILGFAFDGFPIYGPYCYQDPWDNLSPVVLASSSYRIKAEEAPGRPVYGTTLLNPPAGSLMEDWEYSEGLGMLDFHNGRYCVTPEYPNGTYAYFLATEEGNESELIPQFPYIMGTTSRESLDQPFNSGAKTPPPPPTDEGGEVIPPTIQITSQPQNVTTNAGITVQFVITTQILPEDGPKRYQWYRSTDGGFSYATINGATSNTLQFTALAYMSGYKYKCVVIGPVGALPAQNSPLESDVATLTITGVGDGQTAEDFSSTNLKFSTTIVSFDAT
Physico‐chemical
properties
protein length:532 AA
molecular weight: 58364,28990 Da
isoelectric point:4,39299
aromaticity:0,13158
hydropathy:-0,44850

Domains

Domains [InterPro]
IPR025924
STR
160–356
IPR025924 IPR007110
IPR025924
STR
162–356
IPR025924 IPR013783
IPR013783
STR
405–505
IPR013783
YP_010656690.1
1 532
Architecture
STR
STR
STR 160-356 | STR 404-505 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010656690.1
1 532
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5726
Central domain 11 208 199 0,8823
C-terminal 209 532 323 0,2712
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-208
C-terminal
209-532

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SZBM1
[NCBI] 		2926475 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. CB0101
[NCBI] 		232348 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010656690.1 [NCBI]
Genbank nucleotide accession
NC_070839 [NCBI]
CDS location
range 147633 -> 149231
strand -
CDS
ATGACAGCAACCGCTGAATATAACCCCGCGACTAAAATTCTTACCGTAGATGGAGACGGGCTCCCAAATCCCGTCTCCTACGGCACGTTCCCAAATGCGTACAACCCAAATTTGGTTACTGAACAAGATTTTCAGCATGACTTTTATTATCGTGGTGGTACTTTTGGCATCACTAGAACTTTTGACGATAACACATTCACCCAGAATGGTTATTTGATTCAGATTCCATTATCACCAAACGATAATAGTTTGTTGGGAAGTGCGATTGTCCCTGGTGATCATGTTCTTTTTGTTTTTGACGAAGGAACTGAAAACGAACTCAAACAAAGATTTGTATACACAGGAACAACACAAACCACGACTGCTGGTCAGTTTTGGCGAGCAAGTGATCAATATTTGGAACTGGTCGTTGAGAACCCCAGACTAGATTACTCTGGAACATACACTTACTATGATCAGAGGAACGGCAGAATTTCTGCTCCACTGGGGGCAATTGGTGTTGCTGCAAATGGTGTTGTTTTCTATAACCCCAGTGCTGGTGATGGTGGCAATCCTCCAGTCGGATTCCATTGGAATGCTCACTATGAAAATTCCCCAGTAAACTTTGGAGATGATGCTTGTGGTGGTCATCCAGAACCAACTGGTCAATATCACTATCACGACACACACTTTCTTGATTGCTGGAAAGAGAATAGCATTATTGCTTCTTACAATGATTATTATGGATTATCTCAGTATAATGGTGACAATCTAAGACACCCAGATAGTCATTCTAAGATTCTGGGATTTGCTTTTGATGGATTCCCCATCTATGGTCCTTATTGTTATCAAGATCCTTGGGATAACCTGTCACCTGTTGTCCTCGCTAGCAGCTCTTACAGAATTAAAGCAGAGGAAGCACCAGGAAGACCTGTATATGGAACTACATTACTAAATCCCCCCGCAGGTTCTCTGATGGAGGACTGGGAATACAGCGAGGGTCTGGGTATGCTGGACTTCCATAATGGGAGATATTGTGTCACTCCAGAATATCCTAATGGAACTTATGCTTATTTCTTAGCAACAGAAGAAGGTAATGAGAGTGAATTGATTCCACAATTCCCATACATTATGGGTACGACTTCTAGAGAAAGTCTCGATCAACCCTTTAATAGTGGCGCAAAAACACCCCCTCCCCCACCAACAGACGAAGGTGGAGAGGTTATTCCACCAACCATTCAGATTACATCTCAACCTCAGAATGTAACTACGAATGCTGGTATAACAGTTCAGTTTGTTATTACTACACAGATTCTTCCAGAAGACGGTCCAAAGAGATATCAATGGTATCGCTCTACTGATGGTGGATTCTCATATGCAACTATCAATGGTGCAACATCAAACACATTGCAATTTACTGCCTTGGCATATATGTCTGGGTACAAATATAAGTGTGTTGTAATTGGTCCTGTTGGTGCTCTCCCAGCACAAAACTCTCCATTGGAATCTGATGTTGCAACTTTGACAATTACTGGTGTTGGCGATGGGCAGACTGCAGAAGACTTCTCTTCTACAAACCTCAAGTTCAGCACAACTATCGTCTCGTTTGACGCAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0a093e929be33cba0832433f3055f12a3436b0b797deefd6f20414d3c847091c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5185
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50