Protein

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Genbank accession
WNM54389.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTEGTYIISGVKMPNYTILSGEGKGITYLRIADDAPAETIGITNLNMDGTAEYIGVDNFTIDGNRTRQGNTLSPAGGSRSSNIRFAGVKHGFAYSVESFSSLLHGIDVTYASDDYFYQGDGIRVNEALESKYIHIQECETYDFGDDGITTHHSRYLILQNNYSHDPVKDSGNHNGIEVDDGSQHVFVMGNKTEKCFGGLEIKAHEPTSAASDVVVSDHIDIKSIRSYNIRHIGHHRAGDVQSKTAIILC
Physico‐chemical
properties
protein length:249 AA
molecular weight: 27240,72870 Da
isoelectric point:5,34300
aromaticity:0,08434
hydropathy:-0,40361

Domains

Domains [InterPro]
IPR012334
STR
2–247
IPR012334
IPR011050
STR
3–230
IPR011050
WNM54389.1
1 249
Architecture
STR
STR 2-247 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNM54389.1
1 249
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2503
Central domain 11 238 229 0,9995
C-terminal 239 249 10 0,3252
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-238
C-terminal
239-249

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage S-CoN_Ph17
[NCBI] 		3076573 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus sp.
[NCBI] 		29387 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNM54389.1 [NCBI]
Genbank nucleotide accession
OR354840 [NCBI]
CDS location
range 55389 -> 56138
strand -
CDS
ATGACAGAAGGTACTTATATTATATCTGGTGTTAAAATGCCTAACTATACTATTTTAAGTGGAGAAGGTAAAGGGATAACATATTTAAGAATTGCAGATGATGCGCCAGCTGAAACAATTGGTATAACTAACTTAAATATGGATGGAACAGCTGAATATATCGGTGTTGATAATTTCACAATTGATGGAAATAGAACAAGACAAGGGAATACGTTATCTCCAGCTGGTGGTTCACGTTCAAGCAATATTAGATTTGCTGGTGTTAAGCATGGTTTTGCATATTCTGTAGAATCATTTAGTAGTTTATTACATGGTATTGATGTAACGTACGCTAGTGATGATTATTTCTATCAAGGAGACGGAATCAGAGTAAATGAAGCATTAGAAAGTAAATACATTCATATACAAGAATGTGAAACTTATGATTTCGGAGATGATGGTATCACTACTCATCATAGTAGATACTTAATTCTGCAAAATAATTATTCACATGACCCAGTAAAAGATAGTGGGAACCATAACGGTATTGAAGTAGACGATGGTTCACAACATGTATTTGTTATGGGTAACAAAACAGAAAAATGTTTTGGTGGTTTAGAAATCAAAGCACACGAACCTACAAGCGCAGCAAGCGATGTTGTTGTAAGTGACCATATTGATATTAAAAGTATTCGTTCTTATAATATTCGTCATATCGGACATCATAGAGCTGGGGATGTACAATCTAAAACAGCTATAATATTATGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
890c4dcd6fe0946bce9619411ce9477aa4e3eb2de20279a5e3e23c08107df357
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8640
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50