Protein

View in Explore
Genbank accession
YP_009792010.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAQMVKQTTRLYDMADLPKIYGSKGGSQKQHTPVEQEDNLISLNKIKVLLAVADGEVDSSFSLKDLYLADVPVQNQDNSFNYEGVTAEFRPGTQSQDYIAGLDGAASEIQVSREINNDTPYIIAVNNSQLSAIRVKLFWPRLVKQEENGDLNGTTCEYAIDLSVNGSAYTEYTRGVANGKTTTGYDRSIRVNLPAEFSSALVRIRKLTPDSTSSTLVNGMQITTYQEVIDAKFRYPLTALVYVEFSSDLFPNGLPPIAIKKRWKIIRVPTNYTPATRTYSGTWDGTFKMAWSDNPAWVLYDLVVSQRYGLDQRELGVEIDKWGLYEAAQFCDQMVPDGKGGMEPRYTCNVVIQQKVEAYQIIRDICSIFRGLTFYDGEQIGIVVDRPRQPSYVFTNDNVVDGLFNRTFASDKSLYTTANVQFDDVENNYQQDVEPVFDLEATRRFGYNPVDLTAIGCVRRSEANRRGRWLLKTNLRSETITFTTGLEGMIPMIGDVIAVNDQAWSSNYTLNLSGRIVEATGLQVFVPFAIDADPGDRILINKPDGSPEYRTIASVSADKLTLELNTAFSFTPQPDTVFAIDKQNLALQQYVVTGIQKANTDGEDSFQYSITAVQYDPNKYDEIDYGVNIDDRPTSIVDPDRILPPKNITVTSYSKVVQGMSVETMVIGYDKVQYAKTYNVQWRKNNGNWINVPETANTEVDIEGIYAGIYDVRVRAVTDQKSVSAWSEITTVSLTGKVGEPEPLQVITASDDEVFGIRVKWGFGNNSGDTAYVELQQVADNGDGTYTPENASLLTLVPYPQFEYWHTTLPAGKVIWYRGRTIDRIGNVSQWTDFVRGMASDDVSAIIGEIKVDIENSDGYKYLLQNAIDANADIQNQAEAIIENALANDTDVRVMRRENGARKAEYRQAVNLIANETEARVEALTQLKAQIDDEIVGQITTIETALATETEARATADTALSARLGDNEAALNQKLDSYATVEGVGVQYGVKLGLKYNGVEYGAGMSMELTGSGGNVRSQFIFDANRFAISNGISSGSGQWSLPFVVENNQVFIQSAVIQDGSITNAKIGGAIQSNNYVFGSVGWRLDKGGTFENNGSTAGEGRMKQTNETISVADANGRLRVQIGRLTGVY
Physico‐chemical
properties
protein length:1131 AA
molecular weight: 125093,10030 Da
isoelectric point:4,67520
aromaticity:0,09284
hydropathy:-0,33643

Domains

Domains [InterPro]
DC_0014
STR
1–1131
DC_0014
IPR053171
Unmapped
19–898
IPR053171 Coil IPR015406
IPR055385
ATT
106–231
IPR055385 IPR032876 IPR013783 Coil
IPR003961
STR
644–732
IPR003961
IPR003961
STR
644–738
IPR003961
IPR036116
STR
675–732
IPR036116
YP_009792010.1
1 1131
Architecture
STR
ATT
STR
ATT
STR
STR 1-105 | ATT 106-231 | STR 232-354 | ATT 355-502 | STR 503-1131
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009792010.1
1 1131
Domain Start End Length (AA) Confidence
N-terminal 1 527 527 0,9406
Central domain 528 1073 547 0,0345
C-terminal 1074 1131 57 0,6929
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-527
Central
528-1073
C-terminal
1074-1131

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf12
[NCBI] 		2024315 Uroviricota > Caudoviricetes > Drexlerviridae > Eastlansingvirus > Eastlansingvirus Sf12
Host Escherichia coli B
[NCBI] 		37762 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009792010.1 [NCBI]
Genbank nucleotide accession
NC_047848.1 [NCBI]
CDS location
range 20762 -> 24157
strand -
CDS
ATGGCACAAATGGTTAAACAAACAACGAGGTTATATGATATGGCCGATTTGCCAAAGATTTATGGAAGCAAGGGTGGTAGCCAAAAGCAGCACACACCTGTAGAGCAAGAAGATAACCTGATTTCACTCAACAAGATTAAGGTGCTACTGGCCGTTGCTGATGGCGAGGTTGACTCAAGCTTTTCACTTAAAGACCTTTACCTTGCTGACGTTCCCGTGCAAAACCAGGATAACTCATTCAACTACGAAGGAGTGACCGCAGAATTTCGCCCTGGCACTCAGTCTCAAGACTATATCGCCGGACTAGATGGTGCAGCATCAGAGATTCAGGTTAGCCGCGAGATTAACAACGATACACCTTACATCATAGCAGTAAACAACAGTCAGCTATCAGCAATTCGCGTCAAGCTGTTCTGGCCTAGACTCGTTAAGCAAGAAGAGAATGGAGATTTAAATGGCACAACATGTGAATATGCAATCGATTTATCAGTTAATGGCTCAGCGTACACTGAATATACCAGAGGCGTGGCTAACGGTAAAACTACAACAGGTTACGACCGCAGTATCAGGGTTAACTTACCAGCCGAGTTTAGCAGCGCTCTTGTTCGTATTAGGAAGTTAACGCCAGACTCAACAAGCAGCACTCTGGTAAACGGAATGCAGATTACGACCTATCAGGAAGTAATTGACGCCAAATTCCGTTATCCACTTACAGCGCTTGTTTATGTAGAGTTCAGTTCAGACCTTTTTCCTAACGGGTTGCCGCCTATCGCAATCAAGAAAAGGTGGAAGATAATTAGAGTCCCAACAAACTACACCCCAGCAACGCGGACTTATAGCGGAACTTGGGATGGAACTTTCAAGATGGCATGGTCAGATAACCCGGCGTGGGTTTTATATGACCTGGTAGTCAGTCAGAGGTATGGGCTTGACCAGCGAGAGCTTGGAGTTGAGATTGATAAGTGGGGTCTGTATGAAGCTGCGCAATTCTGCGACCAGATGGTCCCGGATGGTAAGGGTGGAATGGAGCCGCGATATACTTGTAACGTTGTCATTCAGCAGAAAGTGGAAGCGTATCAGATTATTCGTGACATCTGTTCCATTTTCCGTGGATTAACCTTCTATGATGGTGAGCAAATTGGGATTGTAGTTGACAGGCCGCGCCAACCAAGTTACGTATTCACAAATGATAACGTAGTCGATGGTTTATTCAACCGCACGTTTGCTAGTGATAAGAGTTTGTACACGACTGCCAACGTTCAGTTTGATGATGTAGAGAACAACTACCAGCAAGACGTAGAGCCAGTGTTTGACCTTGAGGCAACTCGCAGGTTTGGGTATAACCCTGTAGACCTGACTGCAATTGGATGCGTAAGGCGTAGCGAGGCTAACCGTCGTGGTCGTTGGCTCCTTAAAACGAACTTGCGTAGCGAAACAATAACATTCACCACCGGACTCGAAGGTATGATTCCTATGATTGGTGATGTCATTGCTGTTAATGACCAAGCTTGGTCAAGCAATTACACGTTAAACCTTTCTGGTCGAATCGTGGAGGCTACTGGTTTGCAGGTTTTTGTTCCGTTCGCTATTGATGCTGACCCTGGCGACAGAATCTTAATCAACAAGCCAGATGGAAGCCCGGAGTACAGGACTATCGCTTCAGTATCTGCCGATAAGTTGACGCTTGAGCTGAATACAGCATTCAGCTTCACGCCGCAGCCAGATACGGTATTTGCAATCGACAAGCAGAATCTTGCTTTACAGCAATATGTTGTGACCGGGATTCAAAAAGCCAACACGGACGGAGAGGATTCATTCCAGTACAGCATCACGGCTGTTCAGTATGACCCTAACAAGTACGATGAGATTGACTACGGAGTAAACATCGACGACAGGCCAACAAGCATAGTTGACCCTGACAGGATTTTACCACCGAAGAACATTACGGTTACTAGTTACAGCAAAGTAGTTCAGGGCATGAGCGTTGAGACGATGGTTATCGGTTACGACAAGGTGCAGTATGCGAAAACATACAACGTGCAATGGCGTAAGAATAACGGAAACTGGATTAATGTACCGGAGACGGCTAACACTGAGGTTGATATTGAAGGCATCTACGCTGGCATTTACGACGTCAGGGTTCGTGCTGTAACTGACCAAAAATCAGTATCGGCATGGTCTGAAATTACAACAGTTAGCTTGACTGGTAAGGTTGGTGAGCCTGAGCCATTGCAGGTCATCACGGCTTCAGATGATGAAGTATTTGGCATCCGTGTTAAGTGGGGTTTTGGCAATAATAGTGGTGATACTGCTTATGTGGAATTGCAGCAAGTTGCTGATAATGGCGATGGGACATACACCCCTGAGAATGCCTCATTGTTAACTCTCGTTCCTTACCCTCAGTTTGAGTATTGGCACACGACGCTCCCGGCAGGAAAGGTGATCTGGTATAGGGGAAGAACGATCGACAGGATTGGTAACGTATCGCAATGGACTGATTTTGTCAGGGGTATGGCTTCGGATGACGTGAGTGCAATCATTGGAGAAATTAAGGTTGATATTGAAAACTCAGATGGATACAAGTATCTACTCCAGAACGCGATAGATGCAAATGCTGACATTCAGAACCAGGCCGAGGCAATAATTGAGAACGCATTGGCAAACGATACTGATGTTCGTGTTATGAGGCGTGAAAATGGAGCCAGGAAGGCTGAGTATCGTCAGGCTGTTAATCTAATAGCCAACGAAACTGAGGCTCGTGTAGAGGCTCTTACGCAGCTTAAGGCGCAAATTGATGATGAGATTGTTGGTCAGATTACAACTATCGAAACAGCGCTAGCAACCGAGACGGAAGCGAGGGCTACTGCTGATACGGCTCTCAGCGCAAGGCTTGGTGATAACGAGGCGGCTTTGAATCAGAAGCTCGACTCTTACGCTACAGTTGAAGGCGTTGGTGTTCAGTACGGCGTTAAGCTAGGCCTTAAGTACAATGGAGTTGAGTACGGTGCTGGCATGAGCATGGAGTTAACCGGTAGTGGTGGAAATGTTCGTAGTCAGTTCATTTTCGATGCTAACAGGTTTGCAATCAGTAACGGCATTAGTTCTGGTTCCGGTCAGTGGTCGCTGCCTTTCGTTGTCGAGAATAACCAGGTATTCATACAAAGCGCGGTTATTCAGGACGGTTCAATCACTAACGCGAAGATTGGTGGTGCAATTCAGTCTAACAACTACGTATTTGGCTCTGTCGGATGGAGACTTGACAAGGGTGGAACGTTCGAAAATAACGGCTCTACGGCTGGAGAGGGTAGAATGAAGCAAACAAATGAGACAATATCTGTTGCTGACGCTAACGGAAGGCTTCGTGTTCAGATTGGCCGTTTGACTGGAGTTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7c73ca1af428dae4ec1799db9ca4c043f97470f3420a14cc374798ff5483e25a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank