Protein

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Genbank accession
QFP93357.1 [GenBank]
Protein name
putative tail fiber
RBP type
TSP
Evidence RBPdetect
Probability 0,54
Protein sequence
MEDFDYTPLSSMRFQAQLGSEVKRMYKEGESVIKLSLARVTKVNYKYNTVEVMTTLHKNSTSKNPSDNGRYSARLPVMFGGRTPEGKVYGSNTIATVGSLVLIGFLEGNKDNPIVLNIYGDADNQSMLTRTTMTGGDESDEAVQRELWQLFTLYPSMTYQNIDGRGNKEVTFSGKSFMYITDSDPGNEYVQDGAFDYADLPSSRYANGELIEPTSPQSPTVLYVHQGIYDNHRVTFFLKSDGTLRVGSRHRNGKGITYQEMKTDGSFSIVQKQDTTNPEEISKKFSKFEISENGDVTLQSPDHKLTITKDGVLIDGKPIGSGGGGGDLEIIKDLQEKVEGVTTQITIVNGKLDFKIDKVEIEIDLDTLRQEQQKVLDAIRAQLDSLSSALKAMKDYTLPAFEDGTVTADEKKKVNELLTAVGREKSKVDEKYSQTISDPFLPATHKDLLTVSKGVLDSRHQALLNTIEIVMLDGVITPDERIAVAQAFDGYEQAIAALDVSFKQAMDKILEARIKEAQENAMKYRDTEMRKIGSQITQLADSITAKVSSEQLSKEIEDVRSEMATKEEQKEIKDTLEQAQKDIDDAVSNLPYRVEIGSTNGLIFKNNNIDTVLYAKVYKGKDEITSQIPKEQFTWKRISDDADGDIAWDIAHKNIGSSFRATKDDVPMRATFSCDLDI
Physico‐chemical
properties
protein length:678 AA
molecular weight: 75548,92520 Da
isoelectric point:4,96673
aromaticity:0,07080
hydropathy:-0,54100

Domains

Domains [InterPro]
DC_0209
STR
11–678
DC_0209
SSF69255
ATT
64–117
SSF69255 Coil Coil Coil
QFP93357.1
1 678
Architecture
STR
ATT
STR
STR 11-63 | ATT 64-117 | STR 118-678
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFP93357.1
1 678
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,6469
Central domain 141 626 487 0,1712
C-terminal 627 678 51 0,1866
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-626
C-terminal
627-678

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp15
[NCBI] 		2608370 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFP93357.1 [NCBI]
Genbank nucleotide accession
MN364664 [NCBI]
CDS location
range 68580 -> 70616
strand -
CDS
GTGGAAGATTTTGACTACACACCACTGTCCTCTATGAGGTTTCAGGCTCAATTAGGGTCAGAAGTTAAACGTATGTACAAAGAGGGAGAGAGTGTTATTAAGCTCTCTCTTGCTAGGGTTACAAAGGTTAACTACAAATACAATACAGTAGAAGTTATGACAACACTACATAAAAACTCAACATCGAAGAATCCGAGTGACAACGGTAGGTACTCTGCTAGATTGCCTGTAATGTTCGGTGGAAGGACACCTGAAGGAAAAGTATATGGTTCGAATACAATTGCTACAGTCGGATCGTTAGTCTTAATTGGATTCTTAGAAGGTAACAAAGACAATCCTATTGTTTTAAACATCTATGGAGACGCAGATAATCAGTCGATGTTAACACGTACAACGATGACAGGTGGAGATGAATCAGACGAAGCAGTTCAACGTGAGCTATGGCAGTTATTCACTTTGTATCCTTCTATGACATATCAGAACATTGATGGTAGAGGTAATAAAGAAGTAACGTTCTCAGGTAAGTCATTCATGTACATTACAGACTCCGACCCTGGAAATGAATATGTACAGGATGGAGCTTTCGACTACGCAGACTTACCAAGTTCTCGTTATGCAAATGGTGAGCTAATTGAACCAACGTCTCCGCAATCTCCTACAGTATTATACGTACATCAAGGTATCTATGACAATCATAGAGTTACATTCTTCCTTAAATCAGATGGGACGTTACGTGTAGGTAGTAGACATAGAAACGGTAAAGGGATTACATATCAGGAAATGAAAACTGACGGATCGTTCTCTATCGTGCAGAAGCAAGATACTACGAACCCTGAAGAGATTTCTAAAAAGTTTTCTAAGTTTGAAATTTCTGAAAATGGTGATGTCACGCTCCAATCTCCCGACCACAAGCTAACCATCACAAAAGATGGTGTTCTGATTGACGGGAAACCAATCGGCTCAGGTGGTGGAGGAGGAGACCTTGAGATTATCAAGGACTTACAAGAAAAGGTAGAAGGTGTAACCACACAGATAACAATTGTTAACGGTAAGCTAGATTTCAAGATTGATAAAGTTGAAATAGAGATAGACTTGGATACGCTTCGACAGGAGCAACAAAAAGTGTTAGATGCTATCCGAGCACAATTGGACAGTCTATCTAGCGCACTGAAAGCTATGAAAGATTACACGTTACCTGCATTCGAGGATGGTACGGTTACGGCAGATGAGAAGAAGAAAGTTAACGAGCTTCTAACTGCCGTAGGAAGAGAGAAATCAAAGGTAGACGAGAAGTATAGCCAAACTATCTCCGATCCGTTCCTGCCAGCCACACACAAAGATTTACTAACAGTATCGAAAGGTGTACTTGATAGTAGACACCAAGCGTTACTGAACACAATAGAAATTGTTATGTTAGATGGAGTTATCACTCCTGACGAACGTATAGCAGTAGCACAGGCATTCGATGGGTATGAGCAAGCTATCGCTGCTTTAGATGTATCTTTTAAACAGGCAATGGATAAAATCCTCGAAGCCCGTATTAAAGAAGCACAAGAGAATGCTATGAAATATAGAGATACAGAGATGCGTAAAATCGGTTCACAGATTACGCAACTAGCCGACTCTATCACTGCAAAGGTTAGTTCAGAACAGTTATCGAAAGAGATAGAAGATGTTCGTTCTGAAATGGCTACAAAAGAAGAACAAAAGGAAATCAAGGACACATTAGAGCAAGCCCAAAAGGACATTGACGATGCAGTATCTAACCTCCCGTACCGAGTAGAGATAGGAAGTACCAATGGTCTCATCTTCAAGAACAATAACATTGATACAGTCCTGTACGCAAAGGTGTATAAAGGTAAAGACGAAATCACATCACAGATTCCAAAAGAGCAATTCACTTGGAAACGTATTTCGGATGATGCAGACGGGGATATCGCATGGGATATAGCTCACAAGAACATAGGCAGTTCGTTCCGAGCTACAAAGGATGATGTACCAATGAGAGCAACATTCTCATGTGACTTGGACATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e0fc9b59169f06273433ba23c2febfe8d6cf0f328347a989e2fe3775eff40cc9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7094
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a noval phage sp-15 Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2021-07-02 — GenBank