Protein

View in Explore
Genbank accession
XWX36482.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MKLDNLITKLHSYFSQKFVSQLENNFEQIKYWTNKSDDSFNEHLTTQKNAHTTDQIKHKTTKGKDVVLSNHENYQDELIEHLVLGHNGDGNNELKASHTSMDAQSFDSLHQRLYHDFLRESNAREELRADLTKKIQRIVNVDDFGGDPTGQKDSTKAFQDALGNGNVQVTMSGGTYLTTGIKMPNNSRLVGQGKDITTIKFMDETPAENIGITNLKMSGGAENISLESFSFNGNKFRQNKTLKATGGSRSSNIRFAGVTNGYIYNVKSYDALLHCIDVTYANDNYYYEGDGNRVPYSLESKHIFIDNCEVYGCGDDGITTHHSRYITISNCYAHTPTGGSNNNGIEIDDGSQYVFLSNNRTKGNFGGLEIKAHSNASAASGVFVNGHVSIEDTRAYNIRHIGHHRAKTDNKSLTAYDVVLNNCLALNPKYNGVYPGSTPRALLISAYKNVSVNNFTAIGDDDFGKLEGGKLDKKQPAIAIQFMSENISLNNINVRNFKNAEVDIRLFGGDNRPSRVILNNINIWNSSNNIGIGVGSKIYDTKITNCNLHGNGSGIGLRLTNNHAMISGITADNYSTPAWIAGEKYDTPPTVGKGGASIASTGSAGVANASAVIASTGGSKAYSNRSFVLGSGANSKSYGSRSGIINSLNSETDKSGHTQLILNSNRVKSPGNYHVVAGYGSSGNASTSNIKFDLSTYSGNLTLAGQLKQDSADIAELFESQNGLAIDLGTIVTLDGDKIRKAQPNDTPIGVISGTAALVANEKTFHHKDRFLKNEYGVTITNRKQVEFVDDEGNVSFEWRDIPVENPEYNDKIDYQSRSERPEWNVVGLLGQIYTNIEKDVIPGDYINGRAGVGYKDNVNGKGRVMKITSEYTEERGCAIALVLWGAK
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96940,11980 Da
isoelectric point:6,52366
aromaticity:0,08108
hydropathy:-0,54786

Domains

Domains [InterPro]
DC_0125
ATT
1–265
DC_0125 IPR039448 IPR006626 IPR006626 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR012334
STR
122–589
IPR012334 IPR021865
IPR011050
STR
134–527
IPR011050 G3DSA:4.10.80.40
IPR006626
Unmapped
258–280
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
DC_0616
STR
368–659
DC_0616
XWX36482.1
1 888
Architecture
ATT
STR
RBD
ATT 1-265 | STR 266-659 | RBD 660-884 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX36482.1
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,9929
Central domain 154 653 501 0,9616
C-terminal 654 888 234 0,9065
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-653
C-terminal
654-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_93
[NCBI] 		2815644 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX36482.1 [NCBI]
Genbank nucleotide accession
MZ417353 [NCBI]
CDS location
range 24852 -> 27518
strand -
CDS
TTGAAATTAGATAACTTAATTACGAAACTTCACTCGTACTTTAGTCAAAAGTTTGTAAGTCAACTTGAGAATAACTTCGAACAAATAAAATACTGGACTAATAAAAGTGATGATAGCTTTAACGAGCATTTAACCACTCAAAAAAATGCGCATACAACTGATCAAATCAAACACAAAACTACAAAAGGTAAAGATGTCGTATTATCTAATCATGAAAATTATCAAGATGAACTTATTGAACATCTTGTGTTAGGTCATAACGGTGATGGCAATAACGAATTAAAAGCTAGTCACACATCAATGGACGCTCAAAGTTTCGATTCTTTACACCAACGTCTATATCACGACTTTTTAAGAGAAAGTAACGCTAGAGAAGAACTAAGAGCCGACTTAACTAAGAAAATACAACGTATTGTTAACGTTGATGACTTTGGCGGAGATCCTACAGGTCAAAAGGACAGTACGAAAGCTTTCCAAGACGCATTAGGTAACGGCAATGTACAGGTAACTATGAGTGGTGGTACTTACCTTACAACAGGTATTAAAATGCCTAACAACTCTCGTTTGGTAGGACAAGGTAAAGACATTACTACAATTAAGTTTATGGACGAAACACCTGCAGAAAATATTGGTATCACTAACTTAAAAATGAGTGGTGGAGCTGAAAACATTTCATTAGAAAGTTTCTCGTTCAACGGGAATAAGTTTAGACAAAATAAAACGCTTAAAGCTACCGGTGGCTCTCGTTCATCTAACATTAGATTTGCGGGTGTGACTAATGGTTATATCTACAACGTCAAATCGTACGACGCTTTGTTACATTGTATCGATGTAACATATGCAAATGACAATTATTACTACGAGGGTGATGGTAATCGCGTCCCTTATTCATTAGAAAGTAAACATATATTTATCGATAATTGTGAGGTATATGGTTGTGGAGATGACGGTATTACTACCCATCACTCTCGTTACATTACAATTTCTAATTGTTATGCACATACACCAACAGGTGGAAGTAATAACAACGGTATAGAAATTGACGATGGCTCACAATATGTATTCTTATCAAACAACAGAACCAAAGGTAACTTCGGTGGTTTAGAAATCAAAGCGCACAGTAACGCAAGCGCTGCAAGTGGTGTGTTCGTTAACGGTCACGTATCAATCGAAGATACAAGAGCTTACAACATTCGACACATCGGTCACCATAGAGCTAAAACAGACAATAAAAGTTTGACTGCTTATGACGTGGTGCTAAATAATTGCTTAGCTTTAAACCCTAAATACAATGGTGTGTATCCAGGCTCAACACCTAGAGCATTATTAATCAGTGCTTATAAAAATGTATCAGTCAATAATTTCACTGCAATTGGTGATGATGATTTTGGAAAATTAGAAGGTGGAAAACTAGATAAAAAGCAACCAGCAATAGCCATCCAATTCATGTCTGAAAACATCTCACTTAATAATATTAATGTGCGTAACTTTAAAAACGCAGAAGTAGATATCAGATTATTTGGCGGAGATAATAGACCTTCAAGAGTTATTTTAAACAATATCAATATTTGGAATTCATCTAACAATATCGGTATCGGTGTTGGAAGTAAAATATACGATACTAAAATAACTAATTGTAATTTACACGGTAATGGTTCAGGTATAGGATTACGTTTGACAAATAACCACGCTATGATTAGTGGTATCACAGCTGATAATTATTCAACACCTGCATGGATAGCCGGCGAAAAATACGACACACCTCCTACAGTTGGAAAAGGTGGTGCTAGTATAGCGTCTACAGGAAGTGCAGGCGTAGCTAATGCTAGTGCAGTGATTGCATCTACAGGTGGTTCAAAAGCATACAGTAATCGTAGCTTTGTATTAGGTTCTGGTGCTAACTCCAAATCTTATGGATCACGTAGTGGTATTATCAACTCGTTAAATTCAGAAACAGACAAGTCAGGACACACACAATTAATTCTTAATAGTAATCGTGTTAAGTCACCTGGTAACTATCACGTTGTTGCTGGATATGGCTCTAGTGGTAATGCTTCTACATCTAACATTAAATTTGATTTAAGCACTTATTCAGGAAACTTAACTTTAGCCGGTCAACTTAAACAAGATAGTGCCGATATCGCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTAGACGGCGATAAAATAAGAAAAGCGCAACCTAACGATACACCAATTGGCGTTATATCTGGAACTGCCGCGTTGGTAGCGAACGAAAAAACGTTCCACCACAAAGATAGATTTCTTAAAAACGAATATGGTGTGACTATCACGAATAGAAAACAAGTTGAATTTGTAGATGATGAGGGCAACGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAATCGATTATCAATCACGTTCAGAACGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAATCTACACGAACATTGAAAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGTAGGATATAAAGATAATGTGAATGGTAAAGGTCGTGTCATGAAAATAACTTCTGAATACACTGAAGAACGTGGATGTGCAATAGCATTAGTATTGTGGGGTGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c394fdf30e30507e5b5b2f4d4b27cbf3a934f2ed9e46ffc3b4051620991c794c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9020
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank