Protein

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Genbank accession
QDJ97866.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MEDSILIIVPQKTYIPGKGMGPINKPYYVDRNTLDYYDLMNIQYVKVNKNEYVDLNSDGEYDVADYFSIEDFIKQKYLQVNEAFKQIKIISTDINNINEKAGEKLNLIKENLIDDDNLNSYLSELDSFKYSIEDKKLDLQSEKEDVISTIEDMNNKLSSMKDTLTDFETVREQFNSNYNNTMSLNDEMEKLSETTNYVKNMENDVVKVEEKLNLIKDKSEELKLAQDSFNSKIDDFENKLLDYKENLKNYMVENAEMYKGDPGIQGPKGDPFKYSDFTEEQLNGLKGDPFEYSDFTQEQLSELKGEKGGPFEYSDFTQEQLDLLKGEKGDPFEYSDFTEEQLNGLKGDTGKIGTQGLQGLPGLDGNYAPTLPITVRKPNDFNYGNEILKNRIVTDGKGTFGVKYDITTNRLSGGTTYYLDAVNGNDSNDGLSKENPFKSFKVVIPKVNDNDTIMVADGNYFRIGGTLITKAFNKSINIIGTGNNVNIIMADEPSWTLTSGKNRTYEFSRSATDKVVTLDNSIDIKKVSSIDEVESTPNSWFTDGTKVYSNINDNKPSNSNVIPLISSSNIQLTSLASNIYFENLNIYGGRNCIELNLTSNNSTFFKKCNFYHSASSYNGLAIVGGKDIILDSCKGNYNSFDGLNYHIGADGSKPNIIEINCIGMDNGTDKGLNGVKSNNGSTTHEGLKIIRINGIYGRNDGGNVADVNEGTQSWNLGCIAFESYQGKDFQASSGGNLFLDECIAYGSENSINIGDTDSKVYTRGGRYQNKLIVSTEIKY
Physico‐chemical
properties
protein length:779 AA
molecular weight: 87153,47760 Da
isoelectric point:4,59739
aromaticity:0,09756
hydropathy:-0,65237

Domains

Domains [InterPro]
DC_0723
STR
61–545
DC_0723
G3DSA:1.10.287.2610
Unmapped
75–348
G3DSA:1.10.287.2610 IPR011050
Coil
Unmapped
136–156
Coil Coil DC_1219
QDJ97866.1
1 779
Architecture
STR
STR 61-773 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDJ97866.1
1 779
Domain Start End Length (AA) Confidence
N-terminal 1 462 462 0,9600
Central domain 463 768 307 0,9877
C-terminal 769 779 10 0,2649
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-462
Central
463-768
C-terminal
769-779

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PALS_2
[NCBI] 		2591344 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ97866.1 [NCBI]
Genbank nucleotide accession
MN091626.1 [NCBI]
CDS location
range 224474 -> 226813
strand -
CDS
ATGGAAGATAGTATACTAATTATAGTTCCTCAAAAAACTTATATTCCAGGTAAAGGTATGGGACCTATAAATAAACCTTATTATGTTGATAGAAATACATTAGATTATTATGATTTAATGAATATTCAATATGTAAAGGTAAATAAAAATGAATATGTTGATTTAAATTCAGATGGAGAATATGACGTAGCTGATTATTTCTCTATTGAAGATTTTATAAAACAGAAATATCTTCAAGTGAATGAGGCTTTTAAACAAATAAAAATAATATCTACTGATATAAATAATATTAATGAAAAAGCAGGAGAAAAACTTAACTTAATCAAAGAAAATTTAATTGATGATGATAATCTTAATTCATATTTGAGTGAGCTAGATAGTTTTAAATATAGTATTGAAGATAAAAAATTAGATTTACAATCTGAAAAAGAAGATGTAATTTCAACAATAGAAGATATGAATAATAAATTAAGTAGCATGAAAGATACTTTAACTGATTTTGAAACTGTAAGAGAACAATTCAATAGTAATTATAACAATACAATGAGTCTTAATGATGAAATGGAAAAACTTAGTGAGACTACAAACTATGTTAAGAATATGGAAAATGATGTAGTTAAAGTTGAAGAAAAATTAAATCTTATAAAAGATAAATCTGAAGAATTAAAATTAGCACAAGATTCATTTAACAGTAAAATAGATGATTTTGAAAATAAATTATTAGATTACAAAGAAAATCTTAAGAATTACATGGTAGAAAATGCTGAGATGTATAAAGGTGATCCAGGTATACAAGGTCCTAAAGGCGACCCCTTCAAATACTCTGATTTTACTGAAGAACAGTTAAATGGATTAAAAGGAGATCCTTTCGAGTATTCTGATTTTACTCAAGAACAATTATCCGAGTTAAAAGGTGAAAAAGGTGGCCCTTTTGAATATTCCGATTTTACTCAAGAACAATTAGATCTATTAAAAGGTGAAAAGGGAGATCCTTTCGAGTATTCTGATTTTACTGAAGAACAGTTAAATGGATTAAAAGGTGATACAGGTAAGATTGGAACTCAAGGTCTACAAGGTTTACCCGGTCTTGATGGTAATTATGCACCTACCCTTCCAATAACAGTTAGAAAACCTAATGATTTCAATTATGGTAATGAAATATTAAAAAATAGAATTGTTACTGATGGAAAAGGTACTTTTGGAGTGAAATATGATATAACTACTAATAGATTATCAGGCGGAACTACTTACTACTTAGATGCTGTTAATGGTAATGATTCTAATGATGGTTTATCTAAAGAAAACCCATTTAAATCTTTTAAAGTAGTAATACCTAAAGTTAATGATAATGATACAATTATGGTTGCTGATGGTAACTATTTTAGAATTGGCGGCACATTAATTACAAAAGCATTTAATAAGAGCATTAATATAATAGGCACAGGTAATAATGTGAATATTATTATGGCTGATGAACCTTCATGGACACTAACTTCTGGTAAAAATAGAACTTATGAATTTAGTAGATCTGCTACCGATAAAGTTGTAACGCTAGATAATAGTATTGATATAAAGAAAGTAAGTAGTATTGATGAAGTTGAAAGTACACCTAATTCATGGTTTACTGACGGTACTAAAGTTTATTCCAATATTAATGATAATAAACCTTCAAATAGTAATGTAATACCTTTAATATCTTCTTCGAATATACAGTTAACAAGTTTAGCTTCAAATATATATTTTGAAAATTTAAATATATATGGCGGGAGAAACTGCATTGAATTAAATTTAACTTCAAATAACAGTACATTCTTTAAGAAATGTAATTTTTATCATTCTGCTTCAAGTTACAATGGTCTTGCTATTGTTGGCGGTAAAGATATTATTCTTGATAGCTGTAAAGGTAATTATAATAGTTTTGACGGTTTAAATTACCATATTGGTGCTGATGGTTCTAAACCTAATATAATAGAGATTAATTGTATAGGAATGGATAATGGAACCGATAAAGGATTGAATGGTGTTAAATCAAATAACGGATCAACTACTCATGAAGGTTTAAAAATCATTAGAATAAATGGTATATATGGAAGAAATGATGGAGGTAATGTAGCTGATGTAAATGAAGGTACACAATCGTGGAATTTAGGATGTATCGCATTTGAAAGTTATCAAGGAAAAGACTTCCAAGCTTCATCAGGAGGTAATTTATTCTTAGATGAATGTATAGCTTATGGATCTGAAAATAGTATTAATATAGGTGACACTGATAGTAAAGTTTACACTAGAGGTGGAAGATATCAAAATAAATTAATCGTATCTACAGAAATCAAGTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
621b7e714f2e08658ab5d46303a2367cbe695c81c4b81a7ea338e1daa2d1f4c8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6852
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genomic Analysis of PALS2, a Novel Staphylococcus Jumbo Bacteriophage Lee,Y., Son,B., Cha,Y. and Ryu,S. 2021 — GenBank