Protein

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Genbank accession
WNO23386.1 [GenBank]
Protein name
central spike protein
RBP type
TSP
Evidence DepoScope
Probability 0,86
Protein sequence
MIVDEFSSVYECLLYCYKMVKRSEQLNGRRVFPILSVVTNNNDPEGRRRVKIADPLFGNLIESNWIRPIRVSQNQDNPLPQINQMVIVWFVDGDSEKGYYLPIINDANPSREKDDPVNDSAVRIEGNNTIRIDKNDSETVGGNQTVAIAGEQNINVDGNLIENIGGDIDQNVTGKIEVRSESTILIDADGTIIIKNDSGAFISLGGNGEVLIQDSQGRKIRLGGAFNSTWDLNGLPMAFINATSVTIAGKQIATVGAVDTRGDTIVNKGW
Physico‐chemical
properties
protein length:270 AA
molecular weight: 29580,82420 Da
isoelectric point:4,64388
aromaticity:0,05926
hydropathy:-0,29593

Domains

Domains [InterPro]
DC_1119
STR
1–270
DC_1119
IPR037026
ATT
30–108
IPR037026 SSF69349
IPR006531
STR
36–102
IPR006531
WNO23386.1
1 270
Architecture
STR
ATT
STR
STR 1-29 | ATT 30-108 | STR 109-270
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNO23386.1
1 270
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,9088
Central domain 171 259 90 0,1515
C-terminal 260 270 10 0,9841
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-259
C-terminal
260-270

Taxonomy

  Name Taxonomy ID Lineage
Phage Anabaena phage A-1(L)
[NCBI] 		3075938 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Nostoc sp.
[NCBI] 		1180 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNO23386.1 [NCBI]
Genbank nucleotide accession
OR360731 [NCBI]
CDS location
range 21498 -> 22310
strand +
CDS
ATGATAGTTGATGAATTTTCCAGTGTTTACGAATGCTTATTGTATTGTTACAAAATGGTAAAGCGTTCAGAGCAACTGAACGGCCGTCGAGTGTTTCCTATTTTGTCAGTGGTTACAAATAACAACGATCCAGAAGGAAGAAGGAGAGTTAAAATCGCTGACCCTCTTTTCGGTAATTTGATCGAATCGAACTGGATAAGACCGATTAGAGTAAGCCAAAATCAAGATAATCCTTTGCCACAAATTAATCAAATGGTTATCGTTTGGTTTGTCGATGGGGACAGTGAAAAAGGTTATTATTTACCGATTATTAACGATGCCAATCCTTCACGGGAAAAAGATGATCCGGTCAATGATAGCGCTGTCAGAATTGAAGGTAATAACACCATTCGCATTGATAAAAACGATTCTGAAACTGTTGGTGGTAATCAAACCGTGGCGATCGCTGGTGAGCAAAATATAAACGTCGATGGGAATTTGATTGAAAACATCGGAGGAGATATTGACCAGAACGTTACAGGCAAAATAGAAGTTAGAAGCGAATCTACAATACTTATAGATGCTGACGGCACAATCATCATTAAGAATGACTCCGGGGCGTTTATCAGTCTTGGGGGCAACGGTGAAGTGCTGATCCAAGATTCACAGGGACGAAAAATACGTTTAGGTGGTGCGTTCAATTCTACATGGGATTTAAACGGTTTGCCTATGGCGTTCATAAATGCAACTTCAGTTACTATTGCAGGTAAGCAAATCGCAACTGTCGGTGCTGTCGATACGCGTGGCGACACAATCGTTAATAAAGGATGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
40dc4ff8dfd3764db673324841d3e3c811c9240b4dc7fd9c489777ec094a135c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7584
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Structure of the intact tail machine of Anabaena myophage A-1(L) Yu,R.-C., Yang,F., Zhang,H.-Y., Hou,P., Du,K., Zhu,J., Cui,N., Xu,X., Chen,Y.-X., Li,Q. and Zhou,C.-Z. 2024 38531972 GenBank