Protein

View in Explore
Genbank accession
GENB_7aecc68b9b1b [GenBank]
Protein name
receptor binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSFFAGKLNNKSILSLRRGSGGDTNQHINPDSQTIFHSDMPHVIITETHSTGLRLDQGAGDYYWSEMPSRVTQLHNNDPNRVVLTEIEFSDGSRHMLSGMSMGVGAKAYGIMNPQVMSQGGLKTQITASADLSLDVGYFNSGTSGTIPQKLRDGTGCQHMFGAFSGRRGFASSAMYLGGAALYKSAWDGSGYVVPASGTLTIPSDYVRHPGARNFGFNAIYVRGRSCNRVLYGMEGPNYTTAGAVHGASSSGALKFMSNPSNPSAPKYSVGFARADPTNYAYWESMGDPNNAANGPIGIYSEHLGIYPSKITWYVTNLVYNGSGYSIDSGLFTGNDIKLSPREFIIKGVNVNNTSWKFINFVEKNFNVGSRADFRDVGCNLSKGSPSTGISGIATFGLPTTESNNAPSIKGGNVGGLHTNVVSIYNFLPSASWYVSSNPPKIGSNYGDVWSENLLPLRLLGGSGSTVLSGNVVFQGNGSVHVGTVGLGLNSSRNGAIVCTMEFLDDTWLSAGGIGCFNPTEMLSKGANYGDSRFRMGGNTTNKKLHQILSLPAGEYVPFFTIKGTVVNACKLQAAGYTPTPYWVSGLPGSVGQTGYYTLTYYMRNDGNNNISIWLESSMSNIIGMKACLPNIKLIIQRLT
Physico‐chemical
properties
protein length:640 AA
molecular weight: 68453,12420 Da
isoelectric point:8,97724
aromaticity:0,10312
hydropathy:-0,20594

Domains

Domains [InterPro]
IPR059609
RBD
1–640
IPR059609
GENB_7aecc68b9b1b
1 640
Architecture
RBD
RBD 1-640
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_7aecc68b9b1b
1 640
Domain Start End Length (AA) Confidence
N-terminal 1 187 187 0,0107
Central domain 188 386 200 0,0866
C-terminal 387 640 253 0,9708
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-187
Central
188-386
C-terminal
387-640

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Kenya-K42
[NCBI] 		3027629 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
OQ291059.1_CDS_[complement(102589..104511)] [NCBI]
Genbank nucleotide accession
OQ291059.1 [NCBI]
CDS location
range 102589 -> 104511
strand -
CDS

  




        

        
      
    
  






  

  
  

    
Genome Context

  


  

    

      
Genome Context

      

    

  


  

  


  

  

  
  

  


  

    
Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
b22f617c291737f563dc7ec01211b22b005d164ec50d0645bfcfa23a4b404bda

                    

                    
                      ESMFold
                    
                  

                  

                  

                    

                      Source
                      ESMFold
                    

                    

                      Method
                      ESMFold
                    

                    

                      Resolution
                      0,2663
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
                      Download PDB
                    
                  

                  
                  
                  
                

                
                
                

                  

                    
                      
Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50