Protein

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Genbank accession
YP_516200.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MADITPNIVVSMPSQIFTQRREFKSCSNGKIYIGKIDTDPTIAENQIPVYLENEDGKYTRVAQPLIIGTGGYPVYNGQIAKFVTEEGHAMAVYDGDGVQQFYFPNVLKYEPKKAIKELYDALDTKFDKTGGTVNGSLHVTQALHVGGNDSGLRANGDGNVAFYAKNAKVAAWNQDKLHWLNDVEIDGMLKAKAATFGGNVTVSWGGRTATFHENGDVAGPIWGGALSGYLHNTFVTNMRLTGIAWTGNIGNGEHLWHNGGVIVGIQSTANYATNLRVAVRYLQKWVGGTWVGIVSD
Physico‐chemical
properties
protein length:296 AA
molecular weight: 32131,73900 Da
isoelectric point:6,44500
aromaticity:0,10473
hydropathy:-0,23885

Domains

Domains [InterPro]
IPR009093
ATT
1–112
IPR009093
IPR036730
ATT
2–111
IPR036730 DC_0413
IPR036730
ATT
7–109
IPR036730
YP_516200.1
1 296
Architecture
ATT
STR
ATT 1-112 | STR 113-295 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_516200.1
1 296
Domain Start End Length (AA) Confidence
N-terminal 1 131 131 0,9892
Central domain 132 285 155 0,2767
C-terminal 286 296 10 0,9985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-131
Central
132-285
C-terminal
286-296

Taxonomy

  Name Taxonomy ID Lineage
Phage Sodalis phage phiSG1
[NCBI] 		373126 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sodalis glossinidius str. 'morsitans'
[NCBI] 		343509 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Sodalis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_516200.1 [NCBI]
Genbank nucleotide accession
NC_007902.1 [NCBI]
CDS location
range 21687 -> 22577
strand +
CDS
ATGGCTGATATTACGCCAAACATTGTCGTATCCATGCCGTCACAAATTTTCACCCAGCGCCGGGAATTTAAGTCCTGTAGCAACGGCAAAATTTACATCGGCAAAATCGACACCGACCCCACAATAGCTGAAAATCAAATACCCGTTTATCTGGAAAATGAAGACGGAAAATATACCCGAGTCGCCCAGCCACTTATCATCGGCACCGGCGGCTACCCGGTCTACAACGGGCAGATTGCCAAATTCGTCACTGAAGAAGGCCACGCTATGGCGGTGTATGACGGCGATGGCGTACAGCAGTTCTATTTCCCCAACGTGCTGAAATACGAGCCGAAGAAAGCAATAAAAGAACTGTATGACGCGCTAGACACGAAATTCGATAAAACTGGCGGCACCGTTAATGGCAGCCTGCATGTTACCCAGGCATTGCATGTTGGGGGTAATGACTCGGGGTTGCGCGCCAATGGCGACGGCAACGTGGCGTTTTATGCTAAAAATGCCAAGGTGGCAGCGTGGAATCAAGACAAGCTGCACTGGTTAAACGATGTCGAAATAGATGGCATGCTGAAGGCAAAAGCAGCGACATTTGGCGGCAATGTCACCGTCTCATGGGGCGGCAGAACTGCAACCTTTCACGAAAACGGAGATGTGGCGGGTCCCATTTGGGGCGGTGCATTGAGTGGCTATCTCCATAACACCTTCGTCACCAACATGCGTCTGACCGGCATCGCCTGGACGGGGAATATTGGCAATGGTGAACACCTCTGGCACAACGGCGGTGTTATCGTCGGCATTCAGTCAACAGCGAATTACGCCACCAACCTTCGCGTCGCCGTTCGCTACCTTCAAAAATGGGTGGGTGGCACTTGGGTAGGGATTGTTAGTGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4d385cd2883a471f4f2bbb0407eaba910b2cb67520f48f2169d96d55247962c0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8331
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50