Protein

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Genbank accession
YP_009884989.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSLDNFRNRTIIWDTVNKDFPQPIQIMQGDVNARTLLIKIVDNGVEIDLTGHSLKLTYQYTNNGNSGFVIIPPKDLAKGEFILVIPTEMTTTGVIEANLILLNESLEQVIVSKSLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTEANLSDIEALQDSIAKIAEAQANSLPLNVKWFGAKGDGVADDTLSIQRAIDTGFSVFIPPGKYNVKELKGFSSGQIIQGISKAESWGGKNTQNITLLNGIGSADNYVIKNNVWTDGILPTAITVKNLSIEGSKKTNGILVGNSSTIEGVKIQNCINGLSKIKVSNVMNCQINNCTNGVMTAVDSKITNNFFYYNEVGINFDNSNDNSIVNNKIEWNRIGISLTKATFNLISNNIIDRNTTYGIYTFNTANTTILGNQFERNLTNHLYLQGSQFNISTNSFFRKNSEDNQSGKMAPDIAIFAKSVSNSMITNNFVNGKMFNKTGTDYSSNVNYSANTIDGINPDNISISIPETTVAHDQDTKIIIPLPSYFDGALNNPYNVEIVSQKTLITTQDGNFYSNGGIIKSIYMSKSGIELTIINYYKDDLKIAGTIKVRCVYPSLY
Physico‐chemical
properties
protein length:602 AA
molecular weight: 66279,97590 Da
isoelectric point:5,14253
aromaticity:0,07973
hydropathy:-0,20515

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
10–125
G3DSA:2.60.40.3350 IPR011050 DC_1144
IPR018913
ATT
13–147
IPR018913 IPR012334
IPR012334
STR
188–519
IPR012334
IPR006626
Unmapped
280–303
IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
297–441
IPR039448
IPR022441
Unmapped
380–422
IPR022441
YP_009884989.1
1 602
Architecture
ATT
STR
RBD
ATT 10-147 | STR 183-519 | RBD 520-602
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009884989.1
1 602
Domain Start End Length (AA) Confidence
N-terminal 1 204 204 0,9960
Central domain 205 506 303 0,9917
C-terminal 507 602 95 0,9827
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-204
Central
205-506
C-terminal
507-602

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage P4565
[NCBI] 		2662297 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009884989.1 [NCBI]
Genbank nucleotide accession
NC_049476 [NCBI]
CDS location
range 7616 -> 9424
strand +
CDS
ATGAGTTTAGATAATTTTAGAAATAGAACGATTATATGGGATACGGTTAATAAAGATTTCCCTCAACCAATTCAAATAATGCAAGGCGATGTCAATGCAAGAACTTTGTTAATTAAAATAGTTGATAATGGAGTTGAAATTGACTTAACTGGTCATTCGTTAAAACTTACATATCAATATACTAATAACGGTAATTCTGGTTTTGTTATAATTCCTCCTAAGGACTTAGCTAAGGGAGAATTTATTTTGGTAATTCCTACCGAAATGACAACGACTGGAGTTATCGAGGCAAATTTAATTCTTCTCAACGAAAGTTTAGAGCAAGTTATCGTCAGCAAAAGTCTTACATTTATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAAATTGATGATTTCACTAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTAAATGACTTACATGCCCAAACTGAAGCAAATTTGTCTGATATAGAAGCTTTGCAAGATTCAATAGCAAAGATTGCCGAAGCACAAGCAAATAGTTTACCACTTAATGTCAAATGGTTTGGAGCTAAAGGAGATGGGGTAGCTGATGACACTTTGTCAATTCAAAGAGCTATTGATACTGGTTTTTCAGTTTTTATACCTCCTGGTAAGTATAATGTAAAAGAATTGAAAGGTTTTTCATCAGGACAAATCATACAAGGAATTAGTAAAGCAGAGTCTTGGGGAGGGAAAAACACACAAAACATAACGCTCCTTAATGGAATAGGTTCTGCAGACAACTATGTGATAAAAAATAATGTTTGGACAGATGGTATTCTCCCCACCGCTATTACCGTAAAGAATTTATCCATAGAAGGTAGTAAAAAAACAAATGGAATACTTGTCGGAAACTCTAGTACAATTGAGGGAGTGAAAATCCAAAATTGTATTAACGGACTATCTAAGATAAAAGTTTCAAATGTTATGAATTGTCAAATTAACAATTGCACTAATGGAGTAATGACTGCCGTGGATTCAAAAATAACTAATAACTTTTTTTATTATAATGAAGTCGGTATAAATTTTGATAATTCAAATGATAACAGTATTGTGAATAATAAAATAGAGTGGAATAGAATAGGAATTTCCTTAACGAAAGCTACTTTCAATTTAATTAGTAATAATATTATTGACAGGAATACCACTTATGGAATATATACGTTTAATACGGCTAATACAACTATTTTAGGTAATCAGTTTGAAAGAAATTTAACAAATCATCTCTATCTTCAGGGTTCTCAATTTAATATTTCTACAAATTCTTTCTTTAGAAAGAATTCGGAAGATAACCAATCAGGAAAAATGGCTCCTGATATAGCTATCTTTGCTAAGTCTGTGTCAAATTCTATGATAACAAATAATTTTGTTAATGGTAAAATGTTTAACAAGACGGGAACAGATTATAGCTCTAATGTTAACTACTCTGCCAATACGATAGATGGAATAAACCCTGATAACATCTCTATAAGTATCCCAGAAACAACTGTCGCTCATGATCAAGATACAAAAATAATCATTCCTCTTCCAAGTTATTTTGACGGTGCATTAAACAATCCATATAATGTCGAAATTGTTTCCCAAAAAACGTTAATTACTACACAAGACGGAAATTTTTACTCTAACGGAGGAATCATAAAGAGCATTTATATGTCTAAAAGTGGTATTGAGTTAACAATTATCAACTATTATAAAGATGATTTGAAAATAGCAGGGACAATAAAAGTAAGATGTGTATATCCAAGTTTATATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
47c878f3edd9ed2e8b49ddadd3486879a83d984216ef2c08959bcc2cd8f8c85f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8008
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50