Protein

View in Explore
Genbank accession
AGN12379.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MATQITQSSTSVNERGTVSFTITTDAIGIGTSGTLYYSTEQVKGLIATTDFTDGTLIGSVGINTSGVGSISKTIVGDRSTEEIEIFQIEIRSGSSTGTLLATSEEVSIIDTSVNTGQTATGKTFGPVQIGSDSDWYSICDIDSLPNGSKIALFVDGGTSSVQASYDAFIAKLNERNITVISVTNNQEDWIQPFLTALD
Physico‐chemical
properties
protein length:198 AA
molecular weight: 20788,62480 Da
isoelectric point:4,08243
aromaticity:0,06566
hydropathy:-0,00152

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12379.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 164786 -> 165382
strand +
CDS
ATGGCAACACAAATAACACAATCTTCAACATCTGTAAATGAAAGAGGCACAGTCAGTTTTACAATAACTACTGACGCAATAGGTATTGGTACATCTGGTACTCTATATTACTCAACAGAACAAGTAAAAGGATTAATTGCTACTACAGATTTTACAGATGGGACTTTAATTGGTTCTGTTGGTATTAATACTAGTGGTGTTGGTTCTATCTCCAAAACTATTGTAGGAGATAGATCTACAGAAGAAATTGAAATATTTCAAATAGAAATAAGAAGTGGATCTAGCACAGGAACCTTATTAGCAACATCAGAGGAAGTGTCAATTATTGATACTTCAGTTAACACAGGTCAAACTGCTACTGGTAAAACATTCGGACCAGTTCAAATAGGTTCTGATAGTGATTGGTATAGCATATGTGATATAGATAGTTTACCTAATGGATCTAAAATTGCTTTATTTGTTGATGGTGGAACTTCATCCGTTCAAGCATCTTACGATGCCTTTATTGCAAAGTTAAACGAAAGGAATATAACAGTTATTAGCGTAACAAACAATCAAGAAGATTGGATTCAACCATTCCTAACAGCATTGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
18d3e6392f5882c6d2fa00c123242c99b6ca6e0f4273068142c175872fa3b23b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8595
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank