Protein

View in Explore
Genbank accession
WPK39160.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MPYTIKRYSSVNGGSSKPNKTVNDIQIDNTYSSIGLIGSYNESYKSQFFQNMLWKMENFSHTIAPLNPIEGQLWFNPDEKSVKVYISNDKPTSVSSDWKNLGSTILNELTDHESRTGINDPHETTKAQVGLGNVPNVYTFNKTLNLADVLDASICRSNLEVYGTSETYNKTTVNNLFMTKGGTVNNTDRLDGLTSADFVLVDNPVVYRTFDTTSIITNTALTYNNSKGSIVVNTGAGNIDLLSGIRSDGRIASANDTGAMLSFINDNSDPIVTMVLFNRATANNQTAQPVKSYRFTKTNLIIDYDTNPSEMYHTGRIPSNAAVGSLPLNGKAVNTLLLNGIYQSSSPNDNAVVLRDGAGDVHARHIQVSNPDENIETGNLILFRNSNTSDNYVRRANVSSFQSWFRANEPKGVVKAWIQFNGITGSTYKSHNCTLTKLGTGKYRIYYNSFSTPAAGSVVPFVGVTSDGQISTGMAAGTGRLSYNSSLVYLRSTTYTDLEFFRTYNINYNNYSLDSFTNVYADANNITFTWFF
Physico‐chemical
properties
protein length:532 AA
molecular weight: 58628,26320 Da
isoelectric point:6,40004
aromaticity:0,10526
hydropathy:-0,38289

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK39160.1
1 532
Domain Start End Length (AA) Confidence
N-terminal 1 229 229 0,8630
Central domain 230 428 200 0,2128
C-terminal 429 532 103 0,9943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-229
Central
230-428
C-terminal
429-532

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Cassandra
[NCBI] 		3092175 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK39160.1 [NCBI]
Genbank nucleotide accession
OR805292.1 [NCBI]
CDS location
range 258291 -> 259889
strand -
CDS
ATGCCTTACACTATTAAACGTTATTCATCTGTCAACGGCGGCTCTTCTAAACCAAATAAAACCGTTAACGATATACAAATAGACAATACGTACTCTTCTATTGGACTAATAGGATCGTACAATGAATCTTACAAAAGTCAGTTCTTCCAGAATATGCTATGGAAGATGGAAAATTTTAGTCATACTATTGCTCCGTTAAATCCGATAGAAGGTCAATTATGGTTTAATCCAGATGAAAAAAGTGTTAAAGTTTACATAAGTAATGATAAACCTACGTCTGTTTCTTCCGATTGGAAAAATCTAGGATCTACTATTTTAAATGAGCTAACAGATCACGAATCAAGAACAGGTATTAACGATCCCCACGAGACAACAAAAGCACAAGTGGGATTGGGAAATGTTCCTAATGTTTACACATTTAACAAAACATTAAATCTTGCAGATGTATTAGATGCATCTATATGCCGATCTAATTTAGAAGTATACGGGACTTCAGAAACTTACAATAAAACTACTGTAAACAATCTTTTTATGACAAAAGGTGGTACAGTAAATAATACTGACAGATTAGATGGCTTAACTAGTGCTGATTTTGTCCTTGTAGACAACCCTGTTGTTTATAGAACATTCGATACAACCAGTATAATCACTAATACTGCGTTAACATATAATAACTCTAAAGGTTCTATAGTAGTTAACACAGGTGCAGGAAATATAGATTTGTTGTCTGGAATAAGGTCAGACGGAAGAATTGCATCTGCAAACGATACCGGTGCTATGTTATCGTTTATTAACGATAATAGTGATCCTATAGTTACTATGGTTTTATTTAATCGTGCTACTGCAAACAATCAAACAGCACAACCAGTAAAATCATATAGATTTACAAAAACTAATTTAATAATAGACTACGATACTAATCCTAGTGAAATGTATCATACAGGAAGAATACCGTCTAACGCTGCTGTCGGTTCACTTCCACTAAATGGAAAGGCTGTCAATACACTATTATTAAATGGCATTTATCAATCTAGCAGTCCAAATGACAATGCAGTTGTATTAAGAGATGGTGCAGGAGATGTACATGCTAGACACATTCAAGTTTCTAATCCAGACGAAAACATAGAAACAGGAAATTTAATTCTATTTAGAAATTCAAATACAAGCGATAACTATGTTAGACGAGCAAATGTCTCTTCATTCCAGTCGTGGTTTAGGGCTAACGAACCGAAAGGTGTAGTTAAAGCTTGGATACAATTTAACGGAATAACAGGTTCTACTTATAAGTCACATAACTGTACATTAACTAAACTAGGTACAGGGAAATATAGAATATATTACAATTCATTTTCTACGCCTGCTGCGGGTTCTGTTGTTCCGTTTGTAGGAGTTACTAGTGACGGTCAAATATCTACTGGTATGGCTGCTGGCACTGGGAGACTTAGCTACAATTCATCATTGGTATATTTAAGAAGCACTACTTATACAGATTTAGAATTCTTCAGAACATACAATATTAATTATAATAACTATTCTTTAGATTCGTTTACTAATGTATACGCAGACGCTAACAACATAACATTTACATGGTTCTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8351c82602992074e9b758395e4a3ca85b0714fb2a4736dab31c25893c3913c4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5802
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. — — GenBank