Protein

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Genbank accession
APL99497.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKVNGSYTSVVRGVSQQVPQDRYPGQSFEQINFLSDPVRGLARRHGSKRLVEVARSGDHTQFLEDVEDTARTRVYTMDYRGDTYDFIYRPTAAQPGVDAKRNFLFCFGKKVPRHIPVVTQAEDAVATQVAQGGVSAITSVGRYVLVAGQTVRPGYDVETPWANTQRYACVQVRAGAYARTYTVTVTVGGTSFSASYKTMTSAYPGVLDTSDIAYSDPEYSKKVTDRNNAYTTALNQWVADATQDITPQNIADKLRAALITARPSGMPLTIETRGNNIILNHTGGGAVDIKATDSGDGTSIRDTARVVRAVNQVGDFHWVGKVVKVHPTKADASDALYLRAVAVAAGEAGWAEVRWVETAGVIQKPKNVFLMGFIKNDTFYLASTAAILQTISGEGGHPTFANSEAGDEDTVPPPGFIGNRIDYMGLFQDRLMIVSGSTIFMSRTGDYFNWYPSTRVAQDDSDPIEMYALGSEGDVIVSGVTYDRNLTLFGQRFQYVISGRNAITPTNASVVVQSAHENSVDAFPVNSGNLVFFTKYRNRMTTAHQLQIGLVADSPEAYEISRALDTYIKGRPVEIAANTSPDVVVLRTDTQRRSLYVYAYMDTAGNQERLFDSWSRFDYHEEMGALIGVSVHEGSLRLYWLREGRTEAGAYQAAVVCDEQSLESETSETPYLDSWTAHNQSQIVLPSSDTAYGYAFTSNTPQGMLGVTHNRLHELDTYPDKSQLREGYLFESLVTPTNPYMRDRNDKVITTGRLTLGRILVSVNETGGMYADVEVRGTQRTVVNFSGRLTGRSSNRVGVSPVGSTIIPIPIAQDSADCKFTIRSRTWLPLTIVAMEWVGQYFQNSRRV
Physico‐chemical
properties
protein length:848 AA
molecular weight: 93417,33920 Da
isoelectric point:6,02785
aromaticity:0,09552
hydropathy:-0,30790

Domains

Domains [InterPro]
DC_0058
STR
1–848
DC_0058
IPR058003
TTP
3–58
IPR058003 IPR058003
APL99497.1
1 848
Architecture
STR
STR 1-848
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APL99497.1
1 848
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,7497
Central domain 149 347 200 0,4452
C-terminal 348 848 500 0,3518
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-347
C-terminal
348-848

Taxonomy

  Name Taxonomy ID Lineage
Phage Aquamicrobium phage P14
[NCBI] 		1927013 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aquamicrobium sp. H14
[NCBI] 		658602 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Phyllobacteriaceae > Aquamicrobium >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APL99497.1 [NCBI]
Genbank nucleotide accession
KX660669 [NCBI]
CDS location
range 25499 -> 28045
strand +
CDS
ATGAAGGTAAACGGATCGTACACAAGTGTAGTACGGGGCGTATCCCAGCAGGTTCCGCAGGATCGGTACCCTGGGCAGAGCTTTGAACAGATCAACTTCCTGTCTGATCCGGTGCGCGGTTTGGCCCGCAGGCACGGAAGCAAGAGGCTGGTGGAGGTTGCCCGTAGCGGGGACCACACACAGTTCTTGGAGGACGTAGAGGACACAGCCCGGACCCGTGTGTATACCATGGATTACCGTGGTGACACCTACGACTTCATCTACCGGCCAACTGCTGCTCAACCTGGGGTAGATGCGAAGAGGAACTTCCTGTTCTGCTTCGGCAAGAAGGTGCCTCGCCACATACCCGTCGTCACCCAAGCCGAAGACGCAGTAGCTACACAGGTTGCACAGGGCGGGGTGTCCGCAATTACAAGCGTGGGACGGTATGTCCTCGTTGCAGGGCAGACGGTACGTCCTGGCTATGACGTGGAGACCCCATGGGCCAACACCCAGCGGTACGCGTGTGTCCAGGTTCGTGCCGGTGCCTACGCAAGAACGTACACGGTAACGGTTACTGTGGGAGGAACGTCCTTCAGTGCATCGTACAAGACCATGACCTCGGCGTACCCCGGAGTCCTGGACACCTCGGATATTGCGTACAGTGATCCGGAGTACAGCAAGAAGGTCACGGACCGGAACAACGCCTACACGACCGCCCTCAACCAGTGGGTAGCAGACGCCACCCAGGACATCACCCCACAGAACATCGCGGATAAACTCCGTGCTGCCCTAATTACTGCACGCCCGAGTGGTATGCCCTTGACCATTGAGACCCGTGGGAACAACATCATCCTGAACCACACAGGTGGAGGGGCTGTGGACATCAAGGCCACCGACAGCGGTGACGGTACGAGTATCCGGGACACGGCGAGGGTAGTTCGAGCAGTGAACCAAGTGGGTGATTTCCATTGGGTTGGGAAGGTGGTCAAGGTACATCCCACAAAGGCGGATGCTTCAGATGCGCTGTACCTGCGTGCTGTCGCAGTCGCGGCAGGGGAAGCCGGGTGGGCGGAGGTCCGCTGGGTCGAGACTGCCGGTGTCATTCAGAAGCCGAAGAACGTGTTCCTCATGGGCTTCATCAAGAACGACACCTTCTACCTAGCCTCTACAGCGGCAATCCTGCAAACCATCTCCGGAGAGGGTGGACACCCAACCTTTGCGAACTCCGAGGCCGGTGACGAGGATACTGTCCCACCCCCAGGGTTCATCGGCAATAGGATCGACTACATGGGACTGTTCCAAGACAGGCTGATGATTGTCAGCGGAAGTACCATCTTCATGTCCCGCACTGGAGACTACTTCAACTGGTACCCGTCAACGCGCGTGGCACAGGACGACAGCGACCCTATCGAGATGTATGCCCTGGGCAGCGAGGGGGATGTCATAGTCTCCGGAGTGACATACGACAGGAACCTTACCCTGTTCGGCCAACGGTTCCAGTACGTGATCAGCGGGCGGAATGCCATCACCCCCACCAACGCTTCGGTGGTTGTGCAGTCTGCTCACGAGAATAGCGTTGACGCGTTCCCTGTTAACTCCGGCAACCTTGTGTTCTTCACCAAGTACCGCAACCGCATGACCACTGCCCACCAGTTGCAGATAGGTCTGGTGGCGGACAGTCCGGAAGCCTACGAGATAAGTCGGGCGTTGGACACATACATCAAGGGCCGTCCCGTGGAGATTGCTGCAAACACCTCCCCCGACGTAGTAGTCCTGCGTACGGATACCCAGCGACGGTCCCTGTACGTGTATGCCTACATGGATACGGCAGGGAATCAGGAACGCCTGTTCGACTCCTGGTCCCGTTTCGACTACCACGAGGAGATGGGGGCCTTGATCGGGGTCAGCGTACATGAGGGAAGCCTCCGGTTGTATTGGTTGCGGGAGGGGAGGACCGAGGCAGGGGCATATCAAGCTGCCGTTGTGTGTGACGAGCAGTCACTGGAAAGCGAAACCTCGGAGACCCCGTACCTTGATTCTTGGACTGCACACAATCAATCGCAGATTGTTCTTCCTTCAAGTGATACAGCCTATGGTTATGCTTTCACCTCCAATACGCCACAAGGCATGCTCGGGGTCACTCACAACCGGCTGCATGAACTCGACACGTACCCGGACAAGTCGCAACTCCGTGAGGGGTACCTGTTCGAGTCCCTGGTCACACCTACCAACCCGTACATGCGCGACCGGAACGACAAGGTAATCACCACAGGGCGACTCACCCTGGGCCGTATCCTCGTGTCGGTCAATGAGACTGGCGGTATGTATGCTGACGTGGAAGTACGTGGGACTCAACGGACCGTGGTGAACTTCTCGGGCCGTCTTACGGGACGCTCTAGCAACAGGGTGGGGGTGTCCCCGGTAGGGTCAACAATCATACCTATCCCCATCGCCCAGGACTCGGCGGATTGTAAGTTTACGATTCGCTCCAGGACATGGTTGCCGCTAACCATCGTGGCAATGGAATGGGTGGGACAGTATTTCCAGAATAGCCGACGGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
62d3efe242f91d4c81924bee503bcd557f26c84b64f648014c3acb5e45eae63a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8023
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Analysis of a Novel Broad Host Range Proteobacteria Phage Isolated from a Bioreactor Treating Industrial Wastewater de Leeuw,M., Baron,M., Brenner,A. and Kushmaro,A. 2017 28106814 GenBank