Protein

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Genbank accession
YP_009811102.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,58
Protein sequence
MALISQTVKNLKGGISQQPNILRYPEQAEAQINAFSSETEGLQKRAPSVFTKIISPRAGDFGSKPLVHIINRDTVEQYQVVFTGTGIRVFGLDGKEYSVTGDMQYVQVSDPQKMLRCVTVADYTFIVNRTWTVQANGNVTDPGFRTDGDCIINVRGGQFGRTLRIHINGGTQASLTLPDGSDAKQTPQTDAQYIVGQLAAQLRTNMGGWTINEGSGFIHIIAPGGDNIRSVATEDGYANQLINAVTHEAQSFTKLPLEAPNGYKVKISATNNGTSDKYYVQYDALNKVWRETVGWGVQVGLDARTMPWALVRQANGSFQMTQLGYANRTCGDNDTNPMPSLVGQTINDVFFFRNRLGFLSGENIVMSRTAKYFNFFPPSVANLSDDDPIDVAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSSGVLTPKSIQLDLTTEFDVDDTARPYGVGRGVYFAAPRASFTSIKRYYAVQDVSDVKDAEDISAHVPSYIPNGVFSIHGSGTENFACVLTTGAPNKLFMYKYLFLEGELKQQAWSHWEFSEGTRILAAQCIGSTMYLILENDQIFMARIHFTKNTVDFSDEPYRIYMDRKIRYVIPKGTYNDDTYQTTFNLSNVYGGLGFWKDKVSCVFLDGQVEEFTPPNGVSWEGNQPIIRLNGNREGEVVFLGANYEFYYEFSKFLIKKTAEDGSTATEDIGRLQLRRAWVNYEDSGAFLIQVENTSRLFEYMMAGGRLGSDSLRVGYLNVGTGQFRFPVVGNAQLNVVRLISDNTTPLNVIGCGWEGNYNRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 88294,15600 Da
isoelectric point:5,59122
aromaticity:0,11335
hydropathy:-0,27494

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
YP_009811102.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811102.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9921
Central domain 143 344 203 0,0884
C-terminal 345 794 449 0,1346
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-344
C-terminal
345-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoP_JA10
[NCBI] 		2283033 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ningirsuvirus
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811102.1 [NCBI]
Genbank nucleotide accession
NC_048052 [NCBI]
CDS location
range 24337 -> 26721
strand +
CDS
GTGGCTCTTATTTCTCAAACAGTTAAAAACCTGAAAGGCGGTATTAGCCAACAGCCGAATATCTTACGTTACCCTGAGCAGGCCGAAGCGCAAATCAATGCGTTCTCCTCTGAGACTGAAGGTCTTCAGAAACGCGCCCCTTCAGTGTTCACTAAGATTATCTCACCTCGTGCTGGGGACTTCGGTAGTAAACCTCTGGTCCATATCATCAACCGTGACACAGTAGAGCAGTATCAGGTGGTCTTCACCGGGACAGGCATTCGTGTGTTCGGTCTGGACGGCAAAGAGTATTCTGTAACGGGTGACATGCAGTACGTTCAAGTGTCCGACCCTCAGAAGATGCTGCGCTGCGTTACCGTGGCTGATTACACTTTCATCGTCAACAGGACGTGGACCGTGCAGGCTAACGGTAATGTGACCGACCCCGGCTTCAGGACTGATGGTGACTGTATCATCAACGTCCGTGGTGGTCAGTTTGGCCGTACCTTAAGGATTCACATCAACGGAGGCACCCAAGCCTCTCTGACGTTACCTGATGGTTCTGACGCTAAGCAGACCCCGCAGACCGATGCTCAGTACATTGTGGGCCAGTTGGCTGCTCAACTCCGTACCAACATGGGCGGCTGGACTATCAACGAAGGCTCAGGGTTCATCCACATCATTGCTCCGGGTGGAGACAACATCCGCTCAGTGGCAACAGAGGATGGCTATGCGAACCAGTTGATTAACGCCGTGACCCATGAGGCTCAGAGTTTCACTAAGTTACCTCTGGAGGCTCCTAATGGTTACAAGGTGAAAATCTCAGCGACCAACAACGGGACCAGCGATAAGTATTACGTTCAGTATGACGCCTTGAATAAGGTCTGGCGTGAGACTGTAGGCTGGGGCGTTCAGGTCGGTCTGGATGCGCGGACCATGCCTTGGGCCTTAGTGCGTCAGGCAAACGGCTCCTTCCAGATGACTCAGTTGGGATACGCTAACCGCACCTGTGGTGACAACGATACCAACCCGATGCCATCCCTCGTGGGCCAGACGATTAACGATGTGTTCTTCTTCAGGAACCGCTTAGGCTTCCTCAGTGGAGAGAACATTGTGATGAGTCGTACCGCTAAATACTTCAACTTCTTCCCGCCTTCAGTAGCCAACCTGAGCGACGATGACCCGATTGATGTTGCTGTGTCCCACAACCGCATCTCAATCCTGAAGTATGCCGTACCGTTCTCTGAGCAGTTACTCCTGTGGTCTGACCAAGCGCAGTTCGTCCTGTCATCTTCAGGTGTCCTGACTCCGAAGTCTATCCAGTTGGACCTGACCACTGAGTTTGATGTGGATGACACAGCGAGACCTTACGGTGTTGGTCGTGGTGTTTACTTCGCGGCTCCTCGTGCCTCCTTCACTTCCATCAAGCGTTACTATGCGGTACAGGATGTGAGTGACGTTAAGGACGCTGAGGATATCTCCGCTCACGTTCCAAGCTACATCCCGAACGGTGTGTTTAGTATCCACGGGTCAGGCACAGAGAACTTCGCGTGTGTGCTCACCACTGGTGCGCCTAACAAGCTGTTCATGTACAAATACCTGTTCCTTGAGGGTGAACTGAAGCAGCAGGCGTGGTCTCATTGGGAGTTCTCAGAGGGAACAAGGATTCTCGCGGCTCAGTGTATCGGCTCGACGATGTATCTGATTCTTGAGAACGACCAGATTTTCATGGCCCGCATCCACTTCACGAAGAACACTGTGGACTTCTCAGATGAGCCTTACCGTATCTACATGGACCGTAAGATTCGCTACGTGATTCCTAAAGGGACCTACAACGATGACACCTATCAGACGACCTTCAACCTCTCCAACGTGTACGGCGGGTTGGGCTTCTGGAAGGATAAAGTCTCCTGTGTGTTCCTTGACGGTCAGGTAGAGGAGTTCACTCCACCGAACGGTGTATCGTGGGAAGGTAACCAACCGATTATCCGACTCAACGGTAACCGTGAGGGCGAGGTGGTGTTCCTCGGTGCGAACTATGAGTTCTACTACGAGTTCTCCAAGTTCCTCATCAAGAAGACTGCGGAGGATGGCTCAACGGCTACTGAGGATATCGGTCGGTTGCAGCTTCGTCGTGCGTGGGTCAACTATGAGGACTCTGGTGCGTTCCTTATCCAAGTGGAGAATACCTCTCGACTCTTTGAGTACATGATGGCTGGTGGTCGCTTAGGCTCCGACAGTCTCCGTGTGGGTTACCTCAACGTGGGTACAGGACAGTTCCGATTCCCGGTAGTGGGCAACGCTCAGTTGAACGTAGTGCGCCTCATCTCAGACAACACGACTCCACTCAACGTGATTGGTTGTGGCTGGGAGGGTAACTACAACCGCCGCTCAAGCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8dafe85d3d7a68cec7343df59ac85786e3d32e1d34af4cbf35ccf9f4b66bef36
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9021
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank