Protein

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Genbank accession
YP_004324923.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTRTVPGTGASIKPIFDENFGVRAIRVLEGGSGYDSANPPRLTVTGCGTPDTAALLYPIIDSDSGQIIHVRVLERGRGYDPLRLQFFPEQETPNVINSFDVNRIWQDHPNSLASGTFSADTDRLRIQSDNHPKPTYIQAEAAPGGGPLIDRSFDQTFIYRGGKDVPHPTIRTEQNNKVLGILANGGLLHTPEWGTTGNAPTNFAIDSVKYDYVKSNSVYDTVTEGNVRYYHSNKTLDEFKLGNGVLEWGNLKQFTWNVKVETGNVSIDVTNVDETLGTVAVGRTIDEIGGNASGEISKVVRDGSNIVTRIYLRQLTGSAFSKNDLCLGSTGFSFKISEDPYTFNAYYIDFGADAEKFGTFTPGTFYFAPENIIVKQNYLIKFNQSDSTNNNHPIRFSTTADGTHNDTPGTLYYTSTGASSDPAADYENEYAPIFIMNADETNRIYYYCSNHPNMAGSSGDEGYMIISTDTTAETLTNNYYVENYYGSGGTLDYSRHTDGHSKILGMSYDGYPIYGPWGYNSSGTVIRQVSSQRLRTTAELPGARPVVNTTGTTTYTVTVSNGEFLFGGSRPNFLSLGRGKTFIFNQDDASNNGEFLLFSETDGGWHPSSSIGTTSYLYELGVTYTLDGSTVTYAAYIAGFNAATQRRIQIVVPVTAPDALYIFGYQTSGLGLRTVQSGYLLGDLVQDYIYDSTVGTLDEFNGKFAVTPDYPNGTYAYFMTEDGSGNPVYPYVIGREFYGTPLFEGDTVPEVISDFPDGAAGEVVLNDSGAISYIKMTKNGDNYYNTTKARILGGEGSGATGTSTVQTVTGLTLLNAGRSYSSAPTVVFEGGGGGQDAQGSAKVDTTGKVTSIDIADPGEFYQEPPFVLLTGGSGIGAKAVATIDQGAITSITVTDQGEGYTTPPTVVFTRLVNLKRKTRARQANNAKNIYLTGLTKDVTTSASEIYVSNTGAFPGSGEFILDYETISYTSKTDEKFAGITRGVNFNYDQRVILDDGQNDDSGVSTYKFNIGDRVIRRVESASNKVAKVYDWNASTRELLLTFEIDELAFIDGGIPSSEEATVQFDAGVAGASGALDSPHVILTVSGSTITTLTVPIATLQDKEFQDIAENAGAGDGIPDLVNTATEYENQISLDGGIYNSLYGIEETQGGTNTTLLQVGDSVKDANVPFKYANIAIAGGLSEGREHNALVNITLDALDGNGQNFSVNEVVTGDTSGVRGTVVSWDSSTKVLQLKDVLAFNTGDVNVGEAGYLYKFSENSTIVDVIIQNAGTNYSATPTMTFEDVGDIRATGTVTMTVAGDQVAGVTITNGGYGYVQSVDNSYNLHPSLTFTNAGGDTTGSGVVGYAIMGGEKVSGNNGAQYRIKSIEYLSTVRSK
Physico‐chemical
properties
protein length:1375 AA
molecular weight: 147525,42960 Da
isoelectric point:4,56294
aromaticity:0,10255
hydropathy:-0,29745

Domains

Domains [InterPro]
DC_1338
ATT
1–834
DC_1338
IPR025924
STR
679–722
IPR025924 DC_0756
YP_004324923.1
1 1375
Architecture
ATT
RBD
ATT 1-834 | RBD 835-1373 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004324923.1
1 1375
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,9466
Central domain 116 631 517 0,6233
C-terminal 632 1375 743 0,0631
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-631
C-terminal
632-1375

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM7
[NCBI] 		445688 Uroviricota > Caudoviricetes > Pantevenvirales > Palaemonvirus > Palaemonvirus pssm7
Host Prochlorococcus marinus str. NATL1A
[NCBI] 		167555 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324923.1 [NCBI]
Genbank nucleotide accession
NC_015290 [NCBI]
CDS location
range 76678 -> 80805
strand +
CDS
ATGACTAGAACTGTTCCAGGTACAGGTGCCTCCATCAAACCAATTTTTGATGAGAATTTTGGTGTACGTGCAATACGAGTATTAGAAGGTGGATCGGGATATGATTCAGCAAATCCACCACGATTAACTGTAACTGGTTGTGGAACACCAGATACAGCTGCATTGCTGTATCCTATTATTGATTCTGATTCTGGACAAATTATTCATGTAAGAGTTCTTGAAAGAGGTCGAGGTTATGATCCTCTAAGATTGCAGTTTTTCCCAGAACAAGAAACACCAAATGTTATAAATTCTTTTGATGTTAATAGAATTTGGCAAGATCATCCAAACTCTTTAGCTTCAGGAACCTTTAGTGCAGATACAGATAGACTTCGTATACAATCTGATAATCATCCTAAACCTACTTACATTCAAGCAGAAGCAGCACCTGGTGGTGGACCATTAATTGATAGAAGTTTTGATCAGACATTTATATACAGAGGAGGTAAAGATGTACCTCATCCTACTATTAGGACAGAACAAAATAATAAAGTACTTGGTATTCTTGCTAATGGTGGTCTTTTACATACACCAGAATGGGGAACCACAGGAAATGCACCAACTAACTTTGCTATCGATTCAGTAAAATATGATTATGTCAAAAGTAATAGTGTTTATGATACTGTAACTGAAGGAAATGTAAGATATTATCACTCAAATAAAACTCTTGATGAATTTAAACTTGGAAATGGTGTATTAGAATGGGGAAATCTCAAACAGTTTACATGGAATGTAAAGGTTGAAACTGGCAATGTTTCTATAGATGTTACAAATGTTGATGAAACTCTTGGTACCGTTGCTGTAGGTAGAACTATTGATGAAATTGGTGGTAATGCCTCTGGAGAAATTTCTAAGGTAGTCAGAGATGGTAGTAATATTGTAACTAGAATTTATTTGAGACAACTTACTGGGTCTGCTTTTTCCAAGAATGACTTATGTTTAGGTTCTACAGGGTTTTCATTTAAAATTTCAGAGGATCCATATACTTTTAATGCATATTATATCGACTTTGGTGCAGATGCAGAAAAGTTTGGTACTTTTACACCAGGAACATTTTATTTTGCTCCAGAAAATATTATAGTAAAACAAAATTATCTGATTAAATTTAATCAATCAGATTCTACTAATAATAATCACCCGATTAGATTCAGTACAACTGCTGACGGTACACATAACGATACTCCTGGAACTCTTTACTATACAAGTACTGGAGCGTCATCAGATCCAGCAGCAGATTACGAAAATGAATATGCTCCTATATTCATAATGAATGCGGATGAAACGAATAGAATTTACTACTATTGTAGTAATCATCCAAATATGGCTGGTTCTTCTGGTGATGAAGGATATATGATTATCAGTACAGATACTACTGCTGAGACACTAACCAATAATTATTATGTTGAAAATTATTATGGATCTGGTGGAACTTTAGATTATAGTCGTCATACTGATGGGCATTCTAAAATTCTAGGAATGTCTTATGATGGATATCCCATTTATGGTCCTTGGGGATATAATTCCAGTGGTACTGTTATAAGACAAGTATCTTCACAACGATTAAGAACTACTGCAGAACTTCCTGGTGCAAGACCTGTTGTAAATACGACTGGTACAACCACTTATACTGTAACAGTTTCTAATGGAGAATTTTTATTTGGTGGTTCTAGACCTAATTTCTTATCTTTAGGTAGAGGAAAGACTTTTATTTTCAACCAAGATGATGCTTCTAATAATGGTGAGTTTTTACTATTTTCAGAAACTGATGGTGGATGGCATCCTTCTAGTAGTATTGGAACCACTTCATATTTGTATGAATTGGGTGTCACATATACATTAGATGGTTCTACAGTAACTTATGCTGCATATATTGCTGGATTTAACGCAGCAACTCAAAGAAGAATTCAAATTGTTGTTCCAGTAACAGCACCTGATGCGTTATATATTTTTGGATATCAAACTAGTGGTTTGGGATTAAGAACTGTTCAAAGTGGTTATCTTTTAGGTGATTTAGTACAAGATTATATTTACGATTCTACTGTTGGAACTCTTGATGAATTTAATGGAAAGTTTGCGGTAACTCCAGACTATCCAAATGGTACATATGCATATTTTATGACAGAGGATGGTAGTGGAAATCCTGTTTATCCATATGTCATTGGACGTGAATTTTACGGTACACCTCTATTTGAGGGAGATACTGTTCCAGAAGTCATATCGGATTTTCCTGATGGTGCTGCTGGTGAAGTTGTACTTAATGATAGTGGAGCAATATCTTATATTAAGATGACCAAGAATGGTGATAATTATTATAATACTACAAAAGCAAGAATTTTGGGTGGTGAAGGATCTGGTGCTACTGGAACATCTACAGTACAGACAGTTACAGGTTTAACATTATTAAATGCTGGTAGAAGTTATAGTAGTGCTCCCACAGTAGTTTTTGAAGGAGGAGGGGGAGGTCAGGATGCTCAAGGATCTGCAAAAGTCGATACTACTGGAAAGGTCACTTCAATTGATATTGCAGATCCTGGAGAATTCTATCAGGAACCTCCATTTGTTCTTTTGACTGGTGGAAGTGGTATTGGAGCAAAAGCAGTTGCTACAATTGATCAGGGAGCGATTACAAGCATCACAGTAACGGATCAAGGTGAGGGTTATACTACTCCACCAACTGTAGTGTTTACAAGATTGGTAAATCTCAAACGTAAGACTAGAGCTCGTCAGGCAAATAATGCTAAAAATATTTACTTAACTGGTCTTACTAAAGATGTAACTACATCTGCTAGTGAAATTTATGTATCAAATACTGGTGCTTTTCCTGGATCTGGTGAATTTATCTTAGACTATGAAACTATTTCATATACTAGTAAAACCGATGAAAAATTTGCTGGTATTACTAGAGGTGTAAACTTTAATTATGACCAGAGGGTTATTCTTGATGATGGTCAAAATGATGACAGTGGTGTTTCTACATATAAATTCAATATTGGTGATCGAGTAATTCGTAGAGTTGAAAGTGCTAGTAATAAAGTTGCTAAAGTTTATGATTGGAATGCCAGTACTAGAGAACTATTATTAACATTTGAAATTGACGAATTAGCATTTATTGATGGTGGTATTCCATCTAGTGAAGAAGCTACAGTTCAATTTGATGCTGGTGTTGCTGGTGCATCTGGAGCTCTTGACTCTCCACATGTTATTCTTACTGTATCAGGATCTACAATTACAACCCTTACAGTCCCAATTGCAACTCTTCAGGATAAAGAATTTCAAGATATTGCAGAAAACGCTGGAGCAGGAGATGGTATACCTGATCTAGTCAATACAGCAACTGAGTATGAGAACCAAATTAGTTTGGATGGTGGTATTTACAATTCTCTTTATGGTATTGAAGAAACGCAAGGTGGAACAAATACTACATTATTACAAGTTGGTGATAGCGTCAAAGATGCTAATGTACCATTTAAATATGCAAACATTGCCATAGCAGGTGGACTTAGTGAAGGAAGAGAGCACAATGCTCTTGTTAATATAACTTTGGATGCTTTGGATGGTAATGGTCAAAACTTTAGTGTTAATGAAGTTGTTACTGGAGATACATCTGGTGTCAGAGGAACAGTAGTTTCTTGGGATTCATCAACTAAAGTTCTTCAGTTAAAGGATGTTCTTGCATTTAACACTGGTGATGTTAATGTTGGAGAAGCTGGATATCTATATAAATTTTCTGAGAATAGCACGATTGTTGATGTTATTATTCAAAATGCAGGAACAAACTATTCTGCCACACCAACAATGACATTTGAAGATGTTGGTGATATTAGAGCAACAGGAACAGTTACTATGACAGTTGCTGGCGACCAGGTTGCAGGAGTTACCATTACAAATGGTGGATATGGTTATGTACAGAGTGTAGACAACTCATATAATCTACACCCATCACTTACCTTCACTAATGCTGGTGGAGATACAACTGGTTCTGGTGTTGTTGGATACGCAATTATGGGCGGTGAAAAGGTTTCTGGAAATAACGGAGCACAGTATAGAATTAAGAGCATTGAGTATTTATCAACTGTTCGTTCCAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4fce827ad9b7afaa27eee012e78af1da85d14c784240829b970b99ea5fbc536a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4532
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage NATL1A-15 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank