Protein

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Genbank accession
AGH57306.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MSRLNVDRISGLTAGSGAPELEIDSSGRFNFDSGTLYIDSVNNRVGVGTSSPTVSMDMGGATDGMVLPKGTDAQRPGSPAAGMLRYNTTSGKVEVYDASNSWADVGGGIPEMNDDTAGSVLRCRRADGNAYDSDNVRNNDEYEAYWTHDLDANYRLENLTQWPFRYIINRGYTIGGYKNAAPYRNGNRTTHSADVTLSLGDVIDRSAAYIGGSMNGINIFVYNCANSWLPAVANTCSYSMITETNRGQNSNWNTLRNRSYSGAWIDFLGNQWYTNNGRNRAYITSGNGNTDRHDLNTEVMLSDIGGTINRVAHAEGEYYSWVSTGQYRFEFASESYTAWSNYAPAPGSGGLNKHQRTRIGFFYASEGTNRNRALTKRRDSDAVILRSGITKPESGGEENNHTGMNKGYCISNYNGAQNNNAWIYYYYVDVVLFGDSTITYRKGIPGSSSGVGREAGDMIGAGIVPRTYMTYTGSGYQAIGGEPLADGTGAMGGFGSY
Physico‐chemical
properties
protein length:497 AA
molecular weight: 54024,33850 Da
isoelectric point:5,50829
aromaticity:0,11066
hydropathy:-0,59437

Domains

Domains [InterPro]
DC_0841
STR
1–290
DC_0841
IPR059888
RBD
46–106
IPR059888
AGH57306.1
1 497
Architecture
STR
STR 1-290 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH57306.1
1 497
Domain Start End Length (AA) Confidence
N-terminal 1 125 125 0,0551
Central domain 126 324 200 0,3640
C-terminal 325 497 172 0,7233
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-125
Central
126-324
C-terminal
325-497

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM2
[NCBI] 		536464 Uroviricota > Caudoviricetes > Pantevenvirales > Ahtivirus > Ahtivirus sagseatwo
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH57306.1 [NCBI]
Genbank nucleotide accession
JF974292 [NCBI]
CDS location
range 31978 -> 33471
strand -
CDS
ATGTCTAGACTAAATGTTGATAGAATCTCAGGTCTAACTGCTGGTTCGGGTGCTCCTGAACTAGAGATTGACAGTAGTGGTCGTTTCAATTTCGATAGCGGTACTCTGTATATTGATTCTGTGAATAACAGGGTCGGTGTTGGAACATCTTCACCAACGGTGTCTATGGACATGGGTGGTGCTACTGATGGTATGGTTCTACCTAAGGGCACAGACGCTCAGAGACCTGGATCACCTGCAGCGGGTATGCTGAGGTATAACACTACGTCAGGCAAGGTTGAGGTCTACGACGCATCCAACTCCTGGGCAGATGTGGGTGGCGGTATTCCTGAGATGAATGATGACACAGCAGGTTCTGTTCTGCGTTGTCGTCGTGCTGATGGTAATGCATACGATTCTGATAACGTCAGAAACAATGATGAGTACGAAGCATACTGGACTCACGATCTAGACGCAAACTATAGACTAGAAAACCTCACACAGTGGCCCTTTAGATACATTATCAACCGTGGATATACCATCGGTGGATATAAGAACGCTGCTCCATATCGTAATGGTAACCGTACTACTCACTCTGCTGACGTTACACTATCTCTAGGTGATGTTATCGATAGATCTGCTGCATACATTGGCGGATCCATGAATGGTATCAACATCTTTGTATATAACTGCGCTAACTCTTGGTTGCCTGCTGTTGCAAACACATGTTCATACTCGATGATTACGGAGACAAACCGTGGTCAGAATAGTAACTGGAACACTCTCAGAAATAGATCTTATTCTGGTGCATGGATTGACTTCTTAGGCAATCAGTGGTACACAAATAACGGTAGAAATAGAGCATATATTACTTCTGGTAATGGTAACACTGACCGTCACGATCTCAATACTGAGGTTATGCTAAGTGACATTGGTGGTACTATCAACCGTGTTGCACATGCTGAAGGTGAGTATTACTCCTGGGTGTCTACAGGTCAGTATAGATTTGAGTTCGCTAGTGAGTCATACACTGCATGGTCCAACTATGCTCCCGCACCTGGATCTGGTGGTCTGAACAAGCACCAGCGTACTAGAATTGGTTTCTTCTATGCTTCTGAGGGTACAAACAGAAACAGAGCACTCACTAAGCGTCGTGACTCTGATGCGGTCATTCTACGTTCTGGTATTACTAAACCCGAATCTGGTGGTGAGGAGAACAACCACACTGGTATGAACAAGGGTTACTGCATCTCTAACTATAACGGAGCACAGAACAACAACGCTTGGATCTATTATTACTACGTTGATGTCGTCCTCTTCGGTGACTCTACAATCACATATCGTAAGGGTATCCCTGGATCTTCTTCTGGTGTTGGTAGAGAAGCAGGAGACATGATTGGTGCTGGTATTGTTCCACGTACCTATATGACTTACACAGGTTCTGGTTATCAAGCAATCGGCGGTGAACCACTTGCTGATGGCACTGGTGCCATGGGTGGTTTCGGTTCTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
995c9c1a3e30b5738fc2043400d3d840733741558b2db89a5aa9c6048ba54d14
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3394
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank