Protein

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Genbank accession
XRA41600.1 [GenBank]
Protein name
tail tube protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,65
Protein sequence
MALSSQSIKNLKGGVSQQPDILRYPNQGAQQINGWSSETQGLQKRPPSKWIRRLHDAGTYGDKPLVHLIHRDSKEQYYLLFSGTQLAVMDLNGILYKVNGWNDYAKTLTPRESLRVITVADYTFVANREKVVQMSNKLTHAGYPDLNTRAIVTCRGGQYGRTLTVRVNGSQIASYLLPDGLATDNTELKKEVEAMDAQNILGELARQINANTATTGITAKVGPTHMLLTGVVFNSIQTEDGYADQLITGFIHQVQTTTKLPIEAPNGYLVEITGEATRSGDNYWVRYDLSSKTWKETVKPGIIAGLDRNTMPHALVREANGEFTWKPLDWTERTCGDDETNPMVSLLDGTINDVFFFRNRLGFLSGENVVMSRTGRYFQLFPSSVAASGDDDPIDVAVSHSKVSILKYAVPFSEQLLLWSDQSQFTLSSSGALSAKTAQLDLTTEFDVMDTARPFGLGRGVYFSAPRARYSSVKRYYAVADVSAVKNAEDISAHIPSYIRNKVFNIHGSGTENYVTVLSDGDPSKLFIYKFLYIDEELQQQSWSYWYFGPATKILACASTGSYMHLILERPEGITVERIEFTQHTTDFDTEPYRAYMDGKRPTTLSLYNSDRYETYIDLNAIYGGQVDKDTDYWVVGLDGWAIKQKPDPVTSRLTLHGDMRGQVVYVGRAYEFLYEFSKFLIKTQADDGSVSTEDSGRLQLRKCWVNYHESGAFNIEVFNGTTTFNYMAGGPDIGAITLGQLDLQTGQQRFTVNGNATRQRVTVRSDTPQPLNIVGCGFEGNYIRRSSGI
Physico‐chemical
properties
protein length:790 AA
molecular weight: 88242,99590 Da
isoelectric point:5,94100
aromaticity:0,10506
hydropathy:-0,37532

Domains

Domains [InterPro]
IPR058003
TTP
1–790
IPR058003
XRA41600.1
1 790
Architecture
TTP
TTP 1-790
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRA41600.1
1 790
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9934
Central domain 145 347 204 0,1146
C-terminal 348 790 442 0,2014
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-347
C-terminal
348-790

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Bosely
[NCBI] 		3411809 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRA41600.1 [NCBI]
Genbank nucleotide accession
PV329693 [NCBI]
CDS location
range 24845 -> 27217
strand +
CDS
ATGGCGCTGAGCAGCCAGAGCATTAAGAACCTGAAAGGGGGCGTGTCGCAGCAGCCTGACATCCTCCGTTACCCCAACCAAGGAGCACAACAGATCAACGGCTGGTCCTCTGAGACCCAAGGTCTCCAGAAGCGTCCACCGTCCAAGTGGATCCGCAGGCTGCACGATGCGGGGACCTATGGCGACAAGCCTCTGGTTCATCTGATCCACCGCGACTCAAAGGAGCAGTATTACCTGCTGTTCAGTGGAACCCAGCTGGCCGTAATGGACCTGAACGGTATCCTGTACAAGGTGAACGGCTGGAACGACTATGCCAAGACCCTGACCCCTCGGGAGTCGCTGAGGGTCATTACGGTTGCCGACTACACCTTCGTTGCGAACCGGGAGAAGGTGGTTCAGATGTCCAACAAGCTGACCCATGCTGGATATCCCGATCTCAACACTCGGGCAATCGTAACGTGCCGTGGTGGCCAGTACGGGCGCACACTGACGGTCCGTGTGAACGGTTCCCAGATTGCCTCGTACCTGCTCCCTGACGGCCTCGCCACGGACAACACGGAGCTCAAGAAGGAAGTGGAGGCGATGGACGCCCAGAACATCCTCGGTGAGCTCGCCCGTCAGATCAACGCCAACACGGCGACAACTGGCATCACTGCGAAGGTCGGGCCGACCCACATGCTGCTGACCGGCGTGGTGTTCAACTCGATCCAGACGGAGGATGGCTACGCCGACCAGCTCATCACTGGCTTCATCCACCAAGTGCAGACCACCACTAAGTTGCCCATTGAGGCCCCTAACGGATACCTCGTGGAGATCACCGGCGAGGCTACTCGTTCGGGCGACAACTACTGGGTCCGTTACGACCTCTCCTCGAAGACTTGGAAGGAGACTGTCAAGCCTGGGATCATCGCTGGTCTCGACCGGAACACCATGCCTCATGCTCTGGTACGTGAAGCCAACGGTGAGTTCACGTGGAAGCCGCTGGACTGGACTGAGCGCACCTGCGGTGACGACGAGACGAACCCTATGGTCAGTCTCTTGGACGGGACGATCAACGATGTGTTCTTCTTCAGGAACCGTCTCGGGTTCCTCAGTGGCGAGAACGTGGTGATGTCGAGGACGGGGCGGTACTTCCAGCTGTTCCCGAGCAGCGTAGCGGCCTCAGGAGACGATGACCCAATCGACGTAGCAGTGAGCCACTCGAAGGTCTCGATCCTCAAGTACGCCGTGCCGTTCTCCGAGCAGCTCCTGCTGTGGTCAGATCAGTCCCAGTTCACGTTGAGCAGCAGTGGTGCACTGAGCGCCAAGACTGCCCAGCTCGACCTGACTACGGAGTTCGATGTGATGGACACGGCGCGACCTTTCGGCCTCGGTAGAGGGGTCTACTTCAGTGCCCCAAGGGCCCGTTATAGTTCCGTCAAGCGGTATTACGCGGTTGCCGATGTGAGCGCCGTTAAGAACGCTGAGGACATCTCTGCGCACATCCCGAGTTACATCCGAAACAAGGTGTTCAACATTCACGGGTCCGGAACGGAGAACTATGTGACCGTTCTGAGCGATGGTGATCCATCCAAGCTGTTCATTTACAAGTTCCTGTACATCGACGAGGAGCTTCAGCAGCAGTCGTGGAGCTACTGGTACTTCGGTCCGGCCACCAAGATCCTTGCGTGCGCCAGCACCGGGTCCTACATGCACCTGATCCTTGAGCGCCCTGAAGGTATCACCGTGGAGCGCATCGAGTTCACGCAGCACACCACAGACTTCGACACGGAGCCTTACAGGGCCTACATGGACGGCAAGCGGCCTACCACGCTTTCCCTGTACAACAGTGACCGATACGAAACGTACATCGACCTCAACGCCATTTATGGTGGTCAGGTGGACAAGGACACGGACTATTGGGTAGTCGGTCTGGATGGCTGGGCAATCAAGCAGAAGCCTGACCCAGTTACGTCGCGACTGACCCTCCATGGGGACATGAGGGGACAAGTCGTTTACGTTGGGCGGGCCTATGAGTTCCTTTACGAGTTCTCGAAGTTCCTAATCAAGACTCAGGCAGATGATGGGTCGGTGTCAACCGAGGACTCTGGCCGCCTCCAGTTGCGCAAGTGCTGGGTCAATTACCATGAGTCCGGGGCGTTCAACATCGAGGTGTTCAACGGTACCACTACGTTCAACTACATGGCTGGCGGTCCCGACATCGGAGCGATCACGCTTGGGCAACTCGACCTACAGACCGGGCAACAGCGTTTCACCGTAAACGGGAACGCAACGCGCCAACGGGTGACCGTAAGGTCTGACACGCCGCAGCCCCTCAATATCGTTGGGTGCGGCTTCGAGGGCAACTACATCCGCAGATCCAGCGGTATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
fe30b7231b73197f5d930de826370e084d02c3998e2a6802af4ce5e231ad8e70
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3120
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50