Protein

View in Explore
Genbank accession
XYA28893.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPQFSQAGGSVSKDVNKQSIARVFGVKMSEVAYLKAGLVVDSYKVLYDKTTQTCWFRGNATGNPISWTVNGIVMTLVTSDGTFTLNIARAEYKRSKMVDTITTVVQSLDAKIASIWEYANVVTDRPSADPSTWDWQPAFMAAHADNKIVELVDGETYTIKSPLVYRYTNGSFSRAVRLPFCHGQAQLNYSTLGNSGEGFDNTLQVDDPAQPAYEAAITVYGASGTVVIKELEGIYFSGNRNTAAIKLVGCCGLKPKNNTYGTNRYGVVFNNGTAAGTFTELCAPEFSRWNSACLVAIAYEKGGGDTSFHGCGLGEGCYISSASASIHPCVLIGANCQPYNAPMNANFWKSGGGSYAPIIRNSSGMHVHFYGNLKAEHSYGQVIASGSTVNFYGELSLWSGYDKGTLIQRQSGGPTGPSGGNLSFSGISTPTTKRWNVATAGTAVQIASYNETSRITITGSTWYATFRLATARRTTGTVINAPIIVETANCNPITKFKITRSASGISITTVEDNTVIVSFRQTDMPDQSSGTAFNTTEYWG
Physico‐chemical
properties
protein length:541 AA
molecular weight: 58082,37340 Da
isoelectric point:8,35480
aromaticity:0,10536
hydropathy:-0,17061

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–92
G3DSA:3.30.2020.50
DC_2155
STR
43–540
DC_2155
XYA28893.1
1 541
Architecture
ATT
STR
ATT 1-92 | STR 93-540 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYA28893.1
1 541
Domain Start End Length (AA) Confidence
N-terminal 1 126 126 0,9849
Central domain 127 428 303 0,9661
C-terminal 429 541 112 0,9803
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-126
Central
127-428
C-terminal
429-541

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnM-Zahir
[NCBI] 		3447921 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYA28893.1 [NCBI]
Genbank nucleotide accession
PV891800.1 [NCBI]
CDS location
range 17705 -> 19330
strand +
CDS
ATGAATCCGCAATTTAGTCAGGCCGGTGGTTCCGTCTCTAAAGACGTGAACAAACAATCCATAGCCAGAGTGTTCGGCGTAAAGATGAGCGAAGTCGCTTATTTGAAAGCTGGACTTGTTGTAGATAGTTACAAAGTCCTGTATGACAAGACAACTCAAACATGTTGGTTCCGGGGTAATGCTACCGGGAATCCTATCAGCTGGACTGTCAACGGTATCGTGATGACTTTGGTTACAAGTGATGGTACATTCACTTTGAATATCGCTCGTGCTGAATATAAACGCAGCAAAATGGTGGATACTATCACAACAGTCGTACAGTCTTTGGATGCTAAAATCGCCAGTATCTGGGAATATGCTAATGTGGTCACAGACCGCCCAAGCGCCGACCCAAGTACCTGGGATTGGCAACCCGCCTTCATGGCCGCGCATGCTGATAACAAGATAGTTGAATTGGTAGATGGGGAGACCTACACCATTAAAAGTCCGTTGGTTTATAGGTACACCAATGGGTCCTTTTCCCGTGCTGTACGCTTGCCTTTCTGTCATGGACAGGCTCAACTTAACTACAGCACCCTGGGTAATTCTGGTGAAGGTTTTGATAATACCCTACAAGTCGACGATCCAGCACAACCAGCGTATGAAGCCGCCATTACAGTTTATGGTGCTTCAGGTACGGTAGTCATAAAAGAGTTGGAAGGTATTTATTTCTCCGGCAACCGTAACACTGCTGCCATTAAACTGGTTGGATGTTGTGGTTTGAAGCCTAAGAACAATACCTATGGGACTAACCGTTATGGTGTTGTATTCAACAATGGTACTGCTGCTGGCACCTTTACCGAACTTTGTGCACCTGAGTTTAGCCGCTGGAATAGCGCCTGTCTCGTTGCTATTGCATATGAGAAGGGTGGTGGTGATACATCTTTCCACGGATGTGGTTTAGGGGAAGGATGTTATATCTCCTCCGCCTCTGCTAGTATTCATCCTTGTGTGCTAATTGGGGCAAATTGCCAACCATACAATGCACCAATGAATGCTAACTTCTGGAAATCTGGAGGAGGCTCTTATGCTCCTATTATCCGTAATAGCTCAGGTATGCACGTTCACTTCTATGGTAACCTGAAAGCTGAACATTCTTACGGCCAGGTAATTGCCTCGGGGTCTACTGTTAATTTTTATGGTGAGCTGTCCCTGTGGTCAGGTTATGACAAAGGTACTTTAATACAACGCCAATCTGGTGGCCCTACTGGCCCTTCTGGGGGTAACTTATCTTTCTCTGGGATCTCAACCCCAACGACTAAGCGTTGGAATGTTGCTACTGCGGGGACTGCGGTACAGATTGCGTCCTACAATGAAACCAGTCGTATTACTATTACAGGGTCTACCTGGTATGCTACATTCCGGTTAGCTACTGCCAGACGCACTACGGGTACTGTAATTAATGCGCCAATAATTGTGGAAACAGCTAACTGTAATCCAATAACTAAATTTAAAATCACGAGGTCTGCTTCAGGTATCAGTATTACAACTGTGGAGGATAACACTGTTATAGTATCTTTCCGTCAGACTGACATGCCTGATCAGTCCAGTGGCACTGCTTTTAACACCACAGAATATTGGGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7f38a2a05db9737708347b43231722e0fc04f41586374dded1052faf698ea421
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8512
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genomic Analysis of Seven Phages Active Against Carbapenem-Resistant Klebsiella pneumoniae Cuello,L., Supandy,A., Van Tyne,D., Patel,R. and Parmar,K. — — GenBank