Protein

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Genbank accession
QDB70928.1 [GenBank]
Protein name
portal protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTLLVQPSFSAGEMAPATYGRVDLARYYTGLRTCRNFQVLPEGGVQNRSGTKFIAEVKASANFTRLIPFQYSTEQTYILEFGNLYIRFVSNGGQVVSGSVPYEIASPYTTADLRDLKFTQSADVLTIVHPNYAPRELKRLAPTNWTLTTIDFQPGIAAPTGLSGSPRTGGSGDTTNYRYRVTAVSSKDTGSIESWASNTVTVASFDDKPGATLSWTAVTGADHYNIYKDKSSGVFGYIGQADTTSFSDINIAPDNDKTVPIGYNPFTGGNNPSVVGYFQQRLVFAASKDQPQTIWMSRVGDFHNFGYSDPYKDDDGIEFTIASREVNQIRHLVSLRDLLVLTSGAEWSVSSSKETGITPESISVSAQSYFGSSGVIPAVYANTALYIQARGGKLSTLAYNDIDAGFRPSDVSVLSSHLLRGYTIEDQAFTLTPNGVLWMVRNDGVLLGFTFMPEQQVFAWHRHDTDGEVESVATVPEGDEDILYMIVKRTINGSTKRYIERMQSRQLTKFESGDYVYDRSFFVDCGLTYDGRGTMSATLTGGTDWKYPNALTLEALSAPFNPGHVGRYLILYGGGDENNIGDVLTVKILAYDSPGVVSVEPQTIVPESLRGIPATRWGFAATTISGLGHLEGKTVSILADGNVAPQAVVSGGSITLDGPSLVVHVGLPITAEIETLDITMQNQQAFLGNKKRINQLVVLLEQSRGFWAGARSDRLRAASGWEYKQRATENYGEPIELKTGKAEISISTDWTDDGRIFIRQSDPLPITILGVLPNVQAGG
Physico‐chemical
properties
protein length:779 AA
molecular weight: 84783,85320 Da
isoelectric point:5,19101
aromaticity:0,10013
hydropathy:-0,20385

Domains

Domains [InterPro]
DC_0058
STR
1–774
DC_0058
IPR013783
STR
196–261
IPR013783
QDB70928.1
1 779
Architecture
STR
STR 1-774 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDB70928.1
1 779
Domain Start End Length (AA) Confidence
N-terminal 1 524 524 0,9534
Central domain 525 723 200 0,4159
C-terminal 724 779 55 0,0547
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-524
Central
525-723
C-terminal
724-779

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP_YA3
[NCBI] 		2588095 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa UCBPP-PA14
[NCBI] 		208963 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas aeruginosa

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDB70928.1 [NCBI]
Genbank nucleotide accession
MK819239 [NCBI]
CDS location
range 7318 -> 9657
strand +
CDS
ATGACCCTGCTCGTTCAGCCGTCTTTCAGCGCGGGCGAGATGGCGCCTGCGACCTATGGCCGTGTTGACCTGGCGCGCTACTACACTGGTCTGCGCACCTGTCGAAACTTCCAGGTGCTACCAGAGGGTGGCGTACAGAACCGCTCTGGCACGAAGTTCATCGCCGAGGTGAAAGCCAGCGCGAATTTCACTCGCCTTATCCCCTTCCAGTACTCGACCGAACAGACCTACATCTTGGAGTTCGGCAACCTGTATATCCGCTTCGTGAGCAATGGCGGGCAGGTTGTCAGTGGATCGGTGCCCTACGAGATCGCTAGTCCGTACACAACTGCCGATCTGCGCGATCTGAAGTTCACTCAGTCTGCCGACGTTCTGACCATCGTTCACCCGAACTACGCGCCACGCGAGTTGAAGCGCCTTGCCCCGACCAACTGGACGCTGACCACTATCGACTTCCAGCCGGGCATCGCTGCTCCAACTGGACTCTCTGGCTCGCCGCGCACTGGTGGGTCTGGCGACACAACGAACTACCGGTACCGGGTTACGGCAGTCAGTTCGAAGGACACAGGTTCCATCGAGTCCTGGGCGAGCAATACCGTCACTGTGGCGAGCTTTGACGATAAGCCAGGCGCCACCCTGTCCTGGACAGCCGTAACAGGTGCGGACCACTACAACATCTACAAGGACAAGTCATCGGGGGTTTTCGGCTACATCGGCCAGGCTGACACCACTTCGTTCAGCGACATCAACATCGCGCCTGACAACGACAAGACTGTGCCGATTGGATACAACCCATTCACTGGTGGCAACAACCCATCGGTCGTAGGCTACTTCCAGCAGCGGCTAGTCTTCGCAGCCAGCAAGGACCAGCCTCAAACCATCTGGATGAGCAGGGTCGGGGACTTCCATAACTTCGGATACTCGGACCCCTACAAGGACGATGACGGCATCGAGTTCACGATTGCCAGCCGCGAGGTAAACCAGATTCGTCACCTCGTATCGCTGCGTGATCTTCTGGTGCTGACCTCTGGCGCAGAGTGGTCGGTTAGTTCCTCGAAAGAAACCGGTATCACCCCTGAGTCGATCTCTGTCAGCGCGCAAAGCTATTTCGGTTCTAGCGGCGTGATTCCAGCCGTCTACGCCAATACTGCGCTGTACATCCAGGCCAGGGGCGGCAAGCTTTCGACGCTCGCCTATAACGATATTGATGCCGGCTTCAGGCCAAGCGACGTGAGCGTTCTTTCATCGCACCTACTGCGCGGGTACACCATCGAGGACCAAGCATTCACGCTGACGCCCAATGGCGTTCTGTGGATGGTCCGTAACGATGGTGTATTGCTCGGATTCACGTTCATGCCAGAGCAGCAGGTTTTCGCCTGGCATCGTCACGACACCGATGGCGAGGTCGAATCCGTAGCGACTGTTCCAGAGGGCGACGAAGATATCCTCTACATGATCGTCAAGCGCACGATCAACGGGTCTACCAAGCGTTACATCGAGCGCATGCAGTCACGCCAGTTGACCAAGTTCGAAAGCGGCGATTACGTCTATGACCGCTCGTTCTTCGTCGACTGCGGCCTGACTTACGACGGGCGCGGCACCATGAGCGCTACGCTGACCGGTGGGACTGACTGGAAATACCCGAACGCGCTGACTCTTGAAGCGCTATCGGCTCCTTTCAATCCCGGGCATGTCGGTCGCTATCTGATCCTCTACGGCGGTGGAGACGAGAACAACATTGGCGATGTGCTGACCGTCAAGATTCTCGCCTATGACTCTCCCGGCGTCGTTTCCGTTGAACCGCAGACTATCGTCCCGGAGTCGCTACGAGGAATCCCGGCAACACGCTGGGGCTTCGCCGCAACCACCATCAGCGGCCTTGGCCATCTTGAGGGGAAGACGGTTTCGATTCTCGCGGACGGAAACGTCGCGCCTCAGGCGGTTGTCTCTGGGGGTTCCATCACGCTGGATGGTCCTTCACTTGTTGTGCATGTCGGCCTCCCGATCACTGCGGAGATAGAGACGCTAGATATCACCATGCAGAACCAGCAGGCGTTTCTCGGCAACAAGAAGCGCATCAACCAGCTTGTCGTTCTGCTCGAGCAGAGCCGTGGCTTCTGGGCGGGCGCTCGGAGTGATCGTTTGAGGGCCGCAAGTGGCTGGGAATACAAGCAGCGTGCAACAGAGAACTACGGCGAGCCTATCGAACTGAAGACAGGCAAGGCGGAAATCAGTATCAGCACAGACTGGACGGACGATGGCCGCATCTTCATCCGCCAAAGCGACCCGCTGCCCATTACGATCTTGGGAGTTCTTCCGAATGTCCAGGCCGGGGGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
57c6ca43be89c78180f25bd740202345a6c7f88f65baf79da05476c58cbd3b65
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2845
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization, Genome Sequence,and Analysis of Pseudomonas phage vB_PaeP_YA3 Yu,X., Gu,Y., Xu,J., Zhang,R. and Liu,X. 2019-06-18 — GenBank