Protein

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Genbank accession
YP_009858246.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MYYSLMRESKVIVEYDGRAYHFDALSNYDINTSYEEFKTLRRTIHRRTNYADSIINAQTPSSISLAINFSNTLTEANFFEWMGFDREGNTFLLPLYSTNIEPTMFNIYIVNKDNNCVYFENCYVSTVDFSLDKSVPILNVGIESGKFSEVSTFTPAGSIVQGEVMSYSPPRVSTNSNVLPALLSASMSFQQQCSWREDKSVFDINKIYNNKRAYVNEMNASATIAFYYTKRFAGDIFYNIEPETDIPLTIRNEHISIDFPSARITKRLQFSDIYRVEWDVIPTADSDPVRIDFFGEIKK
Physico‐chemical
properties
protein length:299 AA
molecular weight: 34484,30380 Da
isoelectric point:4,97798
aromaticity:0,14047
hydropathy:-0,30000

Domains

Domains [InterPro]
IPR056389
ATT
1–298
IPR056389
YP_009858246.1
1 299
Architecture
ATT
ATT 1-298 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009858246.1
1 299
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,9159
Central domain 11 209 200 0,0568
C-terminal 210 299 89 0,5946
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-299

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage rokbiter
[NCBI] 		2713317 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus rokbiter
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009858246.1 [NCBI]
Genbank nucleotide accession
NC_048868 [NCBI]
CDS location
range 22379 -> 23278
strand +
CDS
ATGTACTACTCTCTAATGAGGGAGTCAAAAGTTATAGTTGAGTATGATGGCAGGGCTTATCATTTTGATGCCCTGTCAAATTACGATATCAATACGTCCTATGAGGAATTTAAAACTCTTCGTAGGACTATCCATCGTAGAACCAACTATGCTGACTCTATTATTAATGCACAAACTCCATCTTCAATATCACTGGCTATAAATTTTAGTAATACCCTTACTGAAGCTAACTTCTTTGAATGGATGGGCTTTGACCGAGAGGGTAACACATTCTTACTACCACTTTATAGTACAAATATTGAGCCAACAATGTTTAATATATACATAGTTAATAAAGATAATAACTGTGTATACTTTGAGAATTGCTATGTATCTACTGTAGACTTTTCTCTAGATAAAAGCGTTCCTATCCTAAACGTAGGAATTGAATCTGGTAAGTTCTCTGAGGTGTCTACTTTTACTCCTGCTGGTTCTATTGTTCAGGGTGAAGTTATGTCATATAGTCCTCCTAGAGTATCTACCAACAGTAATGTTTTACCAGCTCTTTTATCCGCTTCTATGTCATTCCAGCAACAATGTTCTTGGAGAGAAGATAAAAGCGTATTTGACATAAACAAAATATATAATAATAAGAGAGCTTATGTTAATGAAATGAATGCTTCGGCAACAATTGCATTTTACTACACCAAGCGATTTGCTGGTGATATATTTTATAATATTGAACCCGAAACTGACATACCATTAACCATCAGAAATGAACATATTTCGATTGATTTTCCTTCAGCACGTATAACAAAACGCCTACAATTCTCGGATATATACAGAGTTGAATGGGATGTAATCCCTACTGCAGACTCTGATCCGGTAAGAATCGACTTCTTTGGAGAAATAAAGAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
aed857629fcdf486cbcfdc07613594e0ca6cbb5b203684f224215833c2d8e82e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8400
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50