Protein

View in Explore
Genbank accession
YP_009801149.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MRLTIGSTLRAPFISLLKEAQMANTIKTVMTYPLNGSTVDFNIPFEYLARKFVTITLIGTDRKVLTLNQDYRFSTKTTITLTKAWGPADGYDTIEVRRYTSATDRLVDFADGSILRAYDLNIAQVQTLHVAEEARDLTADTIGVNNDGNLDARGRRIVNVADAVDDYDAINLHMMKTWNNSALISANAAAASQAAAKTSENNSKTSENNSKTSENNSKTSENNAYQWAQRAEDSPVQGSEFSSYHYSRKAAKSAAAASTSEGNAAVSERNAKTSENNSKTSETNAAASAQTAKDEAAKLGNMNDLAAAIASVDTSNNRVTFKGDVVAGGAVGFVYNGSVDLSWYTADGKTLKFGKGTKYPQAYLDITAAQMAYVSDISSTVFRIRDNVFSPNLEANFGFNGTQFVLNKTSSVTSFSLGGVPLWNVGEYRGLNNMSTRGGFDAYATTGAIVNQGAPTLSSKLRDGGVPSGRVRANFDFWARGDSEGQRQGVIRVHGDDMSGEQNWLFRGAGNYAGRIEGSAGRVAIDTSSDRKLKDIKGDLDMQAAYDRVKAIRMVEYTWNDHEFNIQRGVSRSEVQRGVIAQEMNDIDSHYVTSYEQQLGGLNEGRSETIMNLNETSMLMDALATIKVLQSRLEALESKG
Physico‐chemical
properties
protein length:640 AA
molecular weight: 69524,11420 Da
isoelectric point:5,75554
aromaticity:0,07969
hydropathy:-0,45797

Domains

Domains [InterPro]
DC_0657
STR
4–635
DC_0657
IPR005604
ATT
22–152
IPR005604 IPR030392
IPR030392
CHP
529–589
IPR030392 Coil
YP_009801149.1
1 640
Architecture
STR
ATT
STR
STR 4-21 | ATT 22-152 | STR 153-640
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage Ninurta
[NCBI] 		2163631 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ningirsuvirus
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009801149.1 [NCBI]
Genbank nucleotide accession
NC_047964.1 [NCBI]
CDS location
range 33524 -> 35446
strand +
CDS
ATGCGACTCACTATTGGGAGTACATTACGTGCTCCCTTTATTTCATTACTTAAGGAGGCTCAAATGGCGAATACCATTAAGACCGTTATGACTTACCCGCTGAATGGCTCTACTGTGGATTTCAATATTCCCTTTGAGTATCTGGCCCGTAAGTTCGTGACGATTACCCTGATTGGTACTGACCGTAAGGTACTGACGCTTAATCAGGATTACCGATTCTCTACGAAGACCACCATTACCTTAACGAAGGCATGGGGTCCTGCTGATGGTTACGACACCATTGAGGTTCGTCGTTATACCTCTGCGACCGACCGTCTGGTTGACTTTGCGGACGGTTCGATTCTACGTGCGTATGACCTCAACATCGCTCAGGTGCAGACACTCCACGTTGCTGAAGAAGCGCGAGACCTGACTGCTGACACTATCGGTGTGAACAACGATGGCAACCTTGATGCTCGTGGTCGTCGTATCGTGAACGTAGCGGATGCTGTGGATGATTATGATGCTATCAACCTGCACATGATGAAGACGTGGAACAACTCTGCGTTAATCTCTGCGAATGCTGCTGCTGCCTCTCAGGCCGCTGCCAAGACCTCGGAGAACAACTCGAAGACCTCGGAGAACAACTCGAAGACCTCTGAGAACAACTCGAAGACCTCTGAGAACAATGCGTACCAATGGGCGCAACGTGCAGAGGACTCTCCGGTGCAGGGTAGCGAGTTCTCCTCGTACCACTACTCACGTAAGGCCGCTAAGAGTGCTGCTGCTGCGAGTACCTCTGAAGGTAACGCTGCTGTATCTGAGCGTAACGCTAAGACCTCAGAGAACAACTCGAAGACCTCTGAGACCAATGCTGCTGCTTCTGCACAGACCGCTAAGGATGAGGCCGCGAAGCTTGGTAACATGAATGACCTTGCTGCTGCTATTGCCAGTGTTGATACGTCAAACAACCGTGTCACCTTCAAGGGCGATGTGGTTGCAGGCGGCGCTGTAGGGTTTGTGTATAACGGCTCAGTGGATTTGTCGTGGTACACAGCTGATGGTAAAACCCTTAAGTTCGGTAAGGGCACTAAGTACCCGCAGGCTTATCTGGATATCACAGCAGCCCAAATGGCGTATGTGTCAGATATCAGCAGCACTGTGTTCCGCATCCGGGATAACGTGTTTAGCCCTAACTTAGAGGCCAACTTTGGGTTTAATGGAACTCAGTTCGTACTGAACAAAACGTCATCGGTCACGTCTTTCTCACTCGGTGGTGTTCCTCTGTGGAACGTTGGTGAATACCGTGGATTGAACAATATGTCAACCCGTGGTGGTTTCGATGCTTACGCCACTACAGGAGCAATCGTGAACCAAGGTGCACCAACCTTATCCTCTAAACTTCGTGATGGAGGGGTGCCAAGTGGCAGGGTGCGAGCTAACTTTGACTTTTGGGCGCGCGGAGATTCTGAGGGTCAACGTCAGGGTGTAATCCGTGTCCACGGCGATGACATGAGCGGTGAACAGAACTGGCTTTTCAGGGGCGCTGGTAACTATGCAGGCCGCATCGAGGGTAGCGCTGGGCGTGTTGCTATTGACACGTCATCAGACCGTAAGCTGAAAGATATCAAGGGTGACTTAGATATGCAGGCCGCTTACGACCGCGTTAAGGCTATTCGAATGGTTGAGTACACATGGAATGACCATGAGTTCAACATTCAGCGAGGAGTCAGTCGCAGTGAAGTTCAGCGAGGAGTTATTGCTCAGGAGATGAATGACATTGATTCACATTATGTCACCTCATACGAGCAACAGCTTGGTGGCCTTAATGAGGGTCGTTCAGAGACCATCATGAACCTTAACGAGACTTCCATGCTGATGGATGCACTCGCTACGATTAAGGTACTCCAGTCTCGCCTTGAGGCTCTCGAATCCAAAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
41a22aaa036af0457c00a4be6109006cb8d33de7c972a8f751bf510c6296927e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6660
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank