Protein

View in Explore
Genbank accession
QPL22422.1 [GenBank]
Protein name
receptor binding protein
RBP type
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MTIKNFTFFSPNGTEFPVGSNNDAKLYMMLSGMDYTTFRRTDWSSPVNTALNVQYVNTSFIVAGRYFELINETVALKADSLNYIHINIDLTKTTEPVSVSCETADNSNTIDLNNASGVYKRVVDIITTNGLGVTSRVTPTQKTTVGDLTSNSLRTGDLEFTGNLKTPAKRILFSGASLLLDGDVVNVSKNISDCANGWILHFTEFKSRMNGNTRNSLNQWFFIPKESVQLADVGHSFALANSTGGIVTKFAYLQGNRITGHGVNNNTSSKQFALQHVLEY
Physico‐chemical
properties
protein length:280 AA
molecular weight: 30784,18270 Da
isoelectric point:6,96286
aromaticity:0,09643
hydropathy:-0,19571

Domains

Domains [InterPro]
G3DSA:2.60.520.10
STR
1–139
G3DSA:2.60.520.10
SSF141658
STR
2–139
SSF141658
IPR048780
RBD
2–136
IPR048780
DC_1167
STR
2–280
DC_1167
QPL22422.1
1 280
Architecture
STR
STR 1-280
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPL22422.1
1 280
Domain Start End Length (AA) Confidence
N-terminal 1 152 152 0,9246
Central domain 153 269 118 0,0227
C-terminal 270 280 10 0,9967
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-152
Central
153-269
C-terminal
270-280

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage GP13
[NCBI] 		2777328 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus cremoris
[NCBI] 		1359 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPL22422.1 [NCBI]
Genbank nucleotide accession
MW041637 [NCBI]
CDS location
range 15460 -> 16302
strand +
CDS
ATGACAATTAAAAACTTTACATTCTTTAGTCCAAATGGTACAGAGTTTCCAGTAGGTTCAAATAATGACGCTAAACTCTACATGATGTTATCAGGAATGGACTACACAACGTTCAGGCGTACCGACTGGAGTTCTCCTGTTAATACAGCCTTAAACGTTCAATATGTTAATACTTCTTTCATTGTGGCTGGTCGTTACTTTGAATTGATTAATGAGACCGTAGCCCTTAAGGCTGACTCGTTAAACTATATTCACATTAATATCGATTTGACGAAAACGACAGAACCGGTTAGCGTATCTTGCGAAACAGCAGATAACAGTAATACAATTGACTTGAACAATGCTTCTGGGGTTTATAAACGTGTCGTAGACATCATTACAACTAATGGTTTAGGAGTGACGAGCCGTGTAACACCTACTCAAAAAACAACTGTGGGAGATTTAACTTCTAACAGTCTTAGAACAGGCGATTTAGAATTTACTGGAAACTTAAAAACTCCAGCGAAAAGAATTCTTTTTTCTGGTGCTTCGTTGTTACTTGACGGAGACGTTGTCAATGTTTCTAAAAATATATCAGACTGTGCTAATGGTTGGATTCTTCACTTCACAGAGTTTAAATCACGTATGAACGGAAATACAAGAAACTCACTTAATCAGTGGTTCTTTATTCCTAAAGAATCAGTACAGTTAGCTGATGTAGGACATTCTTTCGCTCTTGCTAATTCCACCGGCGGTATTGTAACTAAATTTGCATATTTGCAAGGTAATCGAATCACAGGTCATGGGGTAAACAATAACACATCTTCAAAACAATTCGCACTACAACACGTATTGGAATATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
da9f57bc49f90c84c7701e0381f753f966337c74aa5b184f5fc5e26a687bb4fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7496
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of 10 Lactococcal Skunavirus Isolated from the Same Canadian Cheddar Cheese Plant Dore,L., Perrault-Jolicoeur,A., Labrie,S., Rousseau,G., Tremblay,D. and Moineau,S. 2015 — GenBank