Protein

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Genbank accession
ARM70595.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,63
Protein sequence
MKGYSFSELVKLAEAALPATGTAVAAQKLANARTIGGVYFDGTANINLPGVNIAGNQNTSGNAASATKLQNVRTIAGQAFDGTQNVVITPATIGASSLGHTHTPAEVGLGNLSNNPVSVNADPASYALRDGNGDLVARAFHGIHIGDGANLNNLQWGKLTGIPATASRWPTAAEAGASPALPINADFGGDSITIDTAQFIEMLRLMGAFGRGYWCCRGSWSYATNRYVNTGIGVIHLAGAIVEVWGSGSGNCTIRVVSATTTGGNGASPNYEWMYVDNGPTYQPGWRLGFNTATGVPWAALRDVPATATRWPSTAEIGALPAAGGTVTGSLTVNGVIVGNDRLVGIGKDNLYTGAGLEARTAIGSTADPSVGFHAAGRYAGTLRMLGDESFGFLDAENTRYSNLRVRDLIAVGKVDTPTIATQNIATGNASNVGWYRSVGDVGWYNETYGGGVYMRDSTYVRVYGGKQLAVESTASDSINTVGGVLADRYQTAGGGTVYNQRGDTTWMTSNSISTTHAGIGVQLGVGPMYWDGAATKSIWHSGNAPATATRWPTAAEVGLGNVANKGWNYGVAADTYAVRDGNGDLVARWMHAAEFYGSGTNLTNLQWSRLTGVPQTAVRWPTWAEVSGKPAEASQWISLLKNTSTTCVKEYILPPQMLNHLAAGGMIHLRVFLNQSGTAAGVRHCKETYIDGSDEWQSGTINIDLEWPGFSYLNIRNNSTGFAANLRNRIISQYPNIQRVDMRLL
Physico‐chemical
properties
protein length:746 AA
molecular weight: 78545,61970 Da
isoelectric point:6,87066
aromaticity:0,08847
hydropathy:-0,14651

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARM70595.1
1 746
Domain Start End Length (AA) Confidence
N-terminal 1 173 173 0,7635
Central domain 174 430 258 0,7375
C-terminal 431 746 315 0,7063
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-173
Central
174-430
C-terminal
431-746

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage SppYZU05
[NCBI] 		1970795 Uroviricota > Caudoviricetes > Chaseviridae > Yushanvirus > Yushanvirus SppYZU05
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARM70595.1 [NCBI]
Genbank nucleotide accession
KY709296.1 [NCBI]
CDS location
range 51590 -> 53830
strand -
CDS
ATGAAAGGATATTCCTTCTCGGAGTTGGTAAAGCTTGCGGAAGCAGCGTTACCAGCGACAGGTACAGCAGTGGCGGCCCAAAAGCTGGCAAACGCACGTACCATCGGTGGAGTCTATTTCGACGGTACCGCCAACATAAACTTGCCAGGGGTAAATATCGCTGGTAACCAAAACACCTCAGGGAACGCGGCGTCCGCTACAAAGTTACAAAACGTGAGAACCATCGCAGGGCAGGCTTTCGACGGGACGCAGAACGTTGTTATTACTCCCGCCACTATAGGCGCCTCTTCGCTCGGGCACACGCATACCCCTGCGGAGGTAGGGCTCGGGAACTTAAGTAATAACCCTGTGTCTGTTAATGCCGACCCCGCCTCTTACGCGCTCCGTGACGGGAACGGGGACTTGGTAGCTAGAGCCTTTCACGGAATCCACATCGGGGATGGCGCGAACCTTAATAACCTGCAATGGGGGAAACTTACCGGAATCCCCGCTACTGCTTCTCGCTGGCCGACGGCTGCAGAGGCTGGAGCGTCCCCTGCGCTTCCTATCAACGCGGATTTCGGTGGTGATAGTATCACAATCGATACTGCGCAGTTCATAGAGATGCTTCGCCTTATGGGGGCTTTCGGGCGGGGGTACTGGTGCTGCCGCGGTAGCTGGAGTTACGCTACAAACAGGTACGTGAACACAGGGATTGGGGTAATCCACCTCGCGGGGGCAATAGTAGAAGTTTGGGGATCAGGAAGTGGCAATTGCACTATCCGCGTTGTTTCAGCGACTACTACAGGGGGGAATGGCGCGTCCCCAAATTACGAGTGGATGTATGTAGATAACGGCCCAACGTACCAGCCAGGCTGGAGACTTGGGTTCAACACCGCGACAGGCGTACCTTGGGCGGCGTTACGAGATGTCCCTGCCACCGCCACCCGTTGGCCATCTACAGCGGAGATCGGCGCGTTACCAGCAGCTGGCGGCACCGTAACAGGATCTCTCACTGTTAATGGCGTTATCGTCGGGAACGACAGACTCGTCGGGATCGGGAAGGATAACCTGTACACGGGAGCAGGACTAGAAGCACGCACCGCGATTGGAAGCACGGCAGATCCATCTGTAGGTTTCCACGCGGCCGGACGGTACGCAGGTACCCTTCGGATGCTTGGTGATGAGTCATTTGGGTTCTTGGACGCGGAAAACACGCGATACAGCAACCTACGGGTAAGAGACCTGATTGCCGTTGGGAAAGTTGACACGCCAACGATCGCCACGCAAAACATTGCTACTGGCAACGCAAGTAACGTTGGCTGGTACCGAAGCGTAGGAGACGTGGGGTGGTACAACGAGACTTACGGCGGCGGCGTCTATATGAGAGACAGCACGTACGTAAGGGTTTACGGCGGGAAGCAACTAGCCGTAGAGAGCACCGCAAGTGACTCCATCAACACGGTCGGAGGCGTTCTGGCTGACCGGTACCAAACCGCAGGTGGCGGGACAGTGTACAACCAACGTGGCGACACCACTTGGATGACGAGCAACAGTATCAGCACTACCCACGCAGGGATCGGCGTCCAGTTAGGTGTTGGCCCCATGTATTGGGACGGTGCAGCGACGAAGTCCATCTGGCATAGCGGCAACGCACCAGCAACTGCTACTCGCTGGCCGACAGCCGCGGAAGTCGGGTTAGGGAACGTGGCTAACAAAGGTTGGAACTACGGAGTCGCCGCAGACACATACGCAGTGCGGGACGGAAACGGGGACTTAGTTGCTCGGTGGATGCACGCGGCGGAATTCTACGGAAGCGGCACGAACCTAACCAACCTGCAATGGTCACGGCTCACTGGAGTTCCACAAACAGCAGTTCGTTGGCCTACATGGGCTGAGGTGTCAGGGAAACCCGCGGAGGCCTCTCAGTGGATTAGCTTGCTCAAAAACACGTCAACTACGTGCGTCAAAGAGTACATCCTACCGCCACAAATGCTGAACCATTTGGCCGCAGGAGGGATGATCCACCTCCGGGTGTTCCTGAACCAAAGCGGCACGGCCGCAGGGGTTAGACATTGTAAGGAAACCTACATCGATGGATCTGACGAGTGGCAGAGCGGGACGATCAACATTGACCTAGAGTGGCCAGGGTTCTCGTACTTGAATATCCGTAACAACTCTACGGGGTTCGCCGCAAACCTCCGAAACCGGATTATCTCTCAATACCCCAACATCCAGCGCGTAGACATGCGATTATTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5d9778bdda3878266d060b01e4e340d03f7caadc4fc0b0746d2453d06ca7177e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5639
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of lytic bacteriophages infecting Shewanella putrefaciens and Shewanella baltica for biocontrol of fish and shrimp spoilage during chilled storage Yang,Z., Tao,X., Gao,L. and Rao,S. 2019-03 — GenBank