Protein

View in Explore
Genbank accession
YP_010056126.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MAQTSYPFDSQTVSESQYSSYFRELQDTGVVGSSDSSSLKVTAGTGMTVSVAAGSAIVRGHFYNSDAAVTLSIAAADTAARTDRIVLRLDPAANSIVLAVIKGTAGGGIPSLNQTDTGIYEVVLANVAVGAGAASIVAANITEQRRFVSSRIGTWSTALRPTTPRLGRLGYNTDTSTWEFWNGSAWTNLTQSVDWASLSNKPSTFPPDTHSHDWNSITAKPTTFPPSAHTTNWSDIVGEPSTYPPSTHSHSWSSITSKPSTFTPSSHSHSAYLESGDTISWANGSKKPFSNSVSDGGPYYAVWVEGSGVFARNTSSIRFKENVRDHPIDPAKVLALRPVIYDRKLEEGKTNRRTDEFGLIAEEVYEQIPEVVNILDGEVDGLRYDLLPVAMLSVLQDQQARIERLEKLVEELSK
Physico‐chemical
properties
protein length:414 AA
molecular weight: 44756,98090 Da
isoelectric point:5,42172
aromaticity:0,08454
hydropathy:-0,30942

Domains

Domains [InterPro]
DC_1002
STR
1–329
DC_1002
DC_0942
RBD
310–414
DC_0942
IPR030392
CHP
315–409
IPR030392
IPR030392
CHP
315–372
IPR030392
YP_010056126.1
1 414
Architecture
STR
RBD
STR 1-329 | RBD 330-414
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage Joe
[NCBI] 		1913034 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptomyces coelicolor
[NCBI] 		1902 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Kitasatosporales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010056126.1 [NCBI]
Genbank nucleotide accession
NC_054674 [NCBI]
CDS location
range 20787 -> 22031
strand +
CDS
GTGGCCCAGACCTCCTACCCGTTCGACAGTCAGACCGTCAGCGAGTCGCAGTACAGCTCGTACTTCCGCGAGCTCCAGGACACTGGCGTCGTCGGCTCCTCGGACAGCTCCTCCTTGAAGGTGACCGCAGGTACCGGCATGACCGTGTCTGTCGCCGCTGGCTCTGCCATCGTGCGCGGACACTTCTACAACAGCGACGCGGCTGTCACCCTCAGCATCGCGGCTGCCGACACGGCGGCTCGAACGGACCGCATCGTCCTTCGCCTCGACCCTGCCGCGAACAGCATCGTCCTGGCCGTCATCAAGGGCACGGCTGGCGGCGGCATCCCCTCGCTGAACCAGACCGACACCGGCATCTACGAGGTCGTCCTCGCGAACGTCGCGGTCGGTGCGGGTGCCGCTTCGATCGTGGCCGCGAACATCACCGAGCAGCGCCGGTTCGTCTCCTCGCGCATCGGTACCTGGAGCACCGCCCTGCGGCCCACCACGCCCCGCCTGGGACGCCTCGGCTACAACACCGACACGTCCACCTGGGAGTTCTGGAACGGCAGCGCCTGGACGAACCTGACGCAGTCTGTCGACTGGGCCAGCCTGAGCAACAAGCCCTCGACGTTCCCCCCGGACACCCACTCGCACGACTGGAACAGCATCACGGCGAAGCCGACGACGTTCCCGCCTTCGGCGCACACGACGAACTGGTCCGACATCGTCGGTGAGCCGTCGACCTACCCGCCCTCGACGCACTCGCACTCCTGGTCCTCGATCACCTCGAAGCCCTCGACGTTCACCCCGAGCTCGCACTCCCACTCCGCCTACCTGGAGTCCGGCGACACGATCTCCTGGGCCAACGGCTCGAAGAAGCCCTTCTCCAACTCGGTGTCTGACGGTGGCCCGTACTACGCGGTGTGGGTTGAGGGCTCTGGCGTCTTCGCCCGCAACACCTCCTCGATCCGCTTCAAGGAGAACGTCCGGGATCACCCGATCGACCCGGCCAAGGTGCTCGCACTCCGCCCGGTCATCTACGACCGGAAGCTGGAGGAGGGCAAGACCAACCGGCGTACCGACGAGTTCGGTCTCATCGCTGAGGAGGTCTACGAACAGATCCCCGAGGTCGTCAACATCCTGGACGGCGAGGTCGACGGTCTCCGTTACGACCTTCTGCCGGTGGCGATGCTCTCGGTGCTCCAGGACCAGCAGGCGCGCATCGAGCGGCTGGAGAAGCTGGTCGAGGAGCTGAGCAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d13cbb265712dd9ea531decb3eb38f30d847adfb20bde261b8b44f5fbb6f2537
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7910
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
DNA sequence of the Streptomyces Phage Joe and characterization of phiJoe genome integration and excision Fogg,P.C.M., Haley,J.A. and Margaret,S.C.M. 2017-03 — GenBank