Protein

View in Explore
Genbank accession
XAI70480.1 [GenBank]
Protein name
particle protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALDLIRVEVKNPVGIISDPSATDVPLQAWNDASNVRFKDGRVTKAQGYEAVFPVPPERPLFLMPYLSGNVPFWFSAGAGYIHRTEGSSWVNVTRSSGPYAAGVENQWSGGFLNQVAVLNNPANPPQSLRPNGTLFEDLPNWPADTRAKVIRPFKNYLVAMNITRNSVEQNTTVKWSSPADPGEVPFTWDVNDATNDAGESFLADTAGAIVDGKKLKDSFIIYKEDSVYAMRYIGGVFVFQFQQLFDDVGMLSRNCAAEFDGKHFVVGQGDVYVHNGVQKQSVIDGKMKNFLYSAIKATGINNVFVVPDYNNTEMWVCFQGSSAQSSNGTADTALIWNWREDTWTMRQIPNAICGTFGIMDPQVSDAWDADGQIWDQDQSAWGSANYNPSKTRVVLGSYENNRVYSIGEVTEFGGAPFLSRLEKRSINFDDDQRLKFVSSVTPHFSGSGKGKVYVGASMLHDAPTEWFGPYPYEVGKDYKIDCRVTGRYIGVRFEIESVGAWTMNGYTIEMTKPTGKR
Physico‐chemical
properties
protein length:518 AA
molecular weight: 57488,68770 Da
isoelectric point:5,19454
aromaticity:0,12355
hydropathy:-0,35097

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAI70480.1
1 518
Domain Start End Length (AA) Confidence
N-terminal 1 379 379 0,7125
Central domain 380 507 129 0,1416
C-terminal 508 518 10 0,9959
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-379
Central
380-507
C-terminal
508-518

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Lyrsu02
[NCBI] 		3138539 No lineage information
Host Pseudomonas syringae
[NCBI] 		317 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAI70480.1 [NCBI]
Genbank nucleotide accession
PP179324 [NCBI]
CDS location
range 14205 -> 15761
strand +
CDS
ATGGCATTGGACCTGATTAGAGTCGAGGTGAAGAACCCTGTAGGGATCATCTCCGACCCAAGCGCTACAGATGTACCACTTCAAGCATGGAACGATGCGTCGAACGTCAGGTTCAAAGATGGTCGGGTAACCAAGGCACAGGGGTACGAAGCTGTATTCCCTGTCCCACCTGAGCGCCCACTGTTCCTTATGCCGTACCTCAGTGGTAATGTTCCTTTCTGGTTCTCTGCTGGTGCAGGCTACATCCATCGGACTGAGGGTAGTTCATGGGTGAACGTCACGCGCAGCTCGGGGCCTTACGCAGCGGGTGTTGAGAACCAATGGAGTGGGGGCTTCCTCAACCAAGTGGCTGTCCTCAACAACCCAGCGAACCCACCACAATCTCTGCGACCTAATGGGACACTCTTTGAGGACCTCCCTAATTGGCCAGCAGATACACGCGCTAAGGTGATCCGTCCTTTCAAGAATTACCTAGTCGCTATGAACATCACACGCAATAGCGTCGAACAAAACACAACCGTTAAGTGGAGCTCTCCCGCCGATCCGGGGGAAGTACCTTTCACTTGGGATGTAAACGACGCGACCAATGACGCAGGTGAAAGCTTCCTTGCGGACACGGCAGGTGCAATTGTCGATGGGAAGAAACTGAAGGACAGCTTCATTATCTACAAGGAAGACTCTGTATACGCCATGCGGTACATCGGCGGGGTATTTGTATTTCAGTTCCAGCAGCTCTTCGATGATGTGGGTATGCTCAGCCGTAATTGTGCTGCTGAGTTCGACGGTAAGCACTTCGTTGTGGGCCAAGGGGATGTCTATGTTCATAATGGTGTCCAGAAGCAGAGTGTGATTGACGGGAAGATGAAGAACTTCTTGTACTCAGCGATCAAGGCCACAGGTATCAACAACGTGTTTGTGGTTCCTGATTACAACAACACTGAGATGTGGGTGTGTTTCCAAGGGTCCTCTGCCCAGTCCTCCAATGGTACAGCCGATACGGCTCTCATCTGGAACTGGCGTGAAGACACATGGACAATGCGTCAGATTCCTAATGCCATCTGTGGCACCTTCGGGATTATGGACCCACAAGTCTCCGACGCATGGGATGCTGATGGTCAAATCTGGGACCAAGATCAGTCTGCTTGGGGTAGTGCAAACTACAACCCATCGAAGACACGAGTGGTTCTAGGCTCGTACGAGAACAACAGGGTTTACTCCATTGGTGAGGTCACTGAGTTCGGAGGCGCACCTTTCCTGAGTCGCCTTGAGAAGCGAAGCATTAACTTCGATGATGACCAGCGCCTGAAGTTCGTATCCAGCGTCACACCGCACTTCAGCGGTAGCGGTAAGGGTAAAGTATACGTCGGTGCCAGTATGCTTCATGACGCTCCTACAGAGTGGTTTGGGCCCTATCCTTACGAGGTGGGCAAGGACTACAAGATCGACTGTAGGGTGACAGGTCGGTACATCGGTGTACGCTTCGAGATTGAATCGGTGGGTGCATGGACGATGAACGGCTACACCATCGAAATGACTAAACCTACAGGGAAACGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
51fee550b8725db5d9955ff1a034b7b678ee17c6eb8d26c63b52fb111b98196e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9040
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50