Protein

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Genbank accession

XRA13967.1 [GenBank]

Protein name

endopeptidase tail family protein

RBP type

TSP

Evidence RBPdetect

Probability 0,89

Protein sequence

MESLILKNRKGTFGEILTDFDFGSFKYEYEKNNERSIGFTIYKTSFNADIFDALLNEMLIVWKGQEYVIKSTSIKYDGEIVTNEITAKHLFMEFQNHYIQKDLENEELNNEETEENKPTMTLEQYLEFGFRNNKLDFSYEIVGEFDKRIAIDELGGKNGMEFLIDGAELFNYIYFADNKKIYIYDDETFYRMADLPLIYKYNSSEVQATTSTTDVRTYIQGYGKKKTKTETKNYNPVKPPNLNYTGTFIKERTWKTEVVGATYWKEFECKWGNETLEWNLKKMSKGGKLDVFLDDEHVGSYQCYNKTATTEKIVIAKGLNKGVHRFKAVFRGGIADVDYKDSKPAMYVGTEKSTVLNLTAVLKGSDAYHTYAEYESPNVDTFGWSEAPTVFDDDTLDKDELLETIKAQLNDQPTVEVSTNYLGSMEEKHYIRNDDVKENHMIRFIHQPLGYNLDLKVVKITESHPVVNEPVEVDFSNSPTDIIKIQQRINRNIKTMNNLVQGGSLNSGSSFSMPEGYSEIVGVTLIDD

Physico‐chemical properties

protein length:	528 AA
molecular weight:	60846,50200 Da
isoelectric point:	4,93558
aromaticity:	0,12121
hydropathy:	-0,59924

Domains

Domains [InterPro]

G3DSA:6.20.110.10
ATT
1–87

G3DSA:6.20.110.10 G3DSA:3.55.50.40 DC_1309 DC_0937

IPR044051
ENZ
4–89

IPR044051 Coil G3DSA:2.60.120.260

IPR010572
ENZ
104–488

IPR010572

XRA13967.1

1 528

Architecture

ATT

STR

ENZ

RBD

ATT 1-87 | STR 88-370 | ENZ 371-488 | RBD 490-528

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:6.20.110.10	ATT	G3DSA:6.20.110.10	1	87	Merged direct domain	G3DSA:6.20.110.10	N-terminal	Low	Positional only	47 proteins / 47 hits
IPR044051	ENZ	DC_0346	4	89	InterPro cluster	Prophage endopeptidase tail, N-terminal	N-terminal	High	Text match	59 proteins / 59 hits
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	89	190	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits
Coil	Unmapped	-	96	123	Coils	Coil	-	-	-	-
IPR010572	ENZ	DC_0675	104	488	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
DC_1309	STR	DC_1309	191	370	Novel HMM	DC_1309	Central	Low	Positional only	61 proteins / 61 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	238	341	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
DC_0937	RBD	DC_0937	490	528	Novel HMM	DC_0937	C-terminal	Low	Positional only	11 proteins / 11 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XRA13967.1

1 528

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	101	101	0,8854
Central domain	102	309	209	0,5445
C-terminal	310	528	218	0,0565

Note: Constraints were applied during segmentation.
Fixed 4 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-101

Central
102-309

C-terminal
310-528

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Staphylococcus phage HHU-22 [NCBI]	3414726	Viruses > unclassified bacterial viruses >
Host	Staphylococcus sp. [NCBI]	29387	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Genbank protein accession

XRA13967.1 [NCBI]

Genbank nucleotide accession

PV454041 [NCBI]

CDS location

range 23883 -> 25469
strand -

CDS

TTGGAAAGTTTAATCTTAAAGAATAGAAAAGGCACGTTTGGTGAAATACTTACTGATTTTGACTTCGGTTCATTCAAATATGAATATGAGAAAAACAATGAACGATCTATTGGTTTTACTATTTACAAAACGTCATTCAATGCTGATATATTTGATGCATTATTAAATGAAATGTTGATAGTGTGGAAAGGTCAAGAGTATGTAATTAAATCTACATCTATTAAGTATGACGGTGAGATTGTTACGAACGAAATTACTGCTAAACACCTATTCATGGAATTTCAAAATCATTATATTCAAAAAGATTTGGAAAATGAAGAATTAAATAATGAGGAAACGGAAGAAAATAAACCCACTATGACACTTGAACAGTACCTTGAATTTGGTTTTAGAAATAATAAATTAGATTTCTCATATGAAATTGTAGGTGAGTTTGATAAACGTATTGCTATCGATGAATTAGGTGGTAAAAACGGTATGGAGTTCCTAATAGATGGTGCTGAATTGTTCAATTACATTTACTTTGCAGACAATAAGAAGATATATATTTACGATGACGAAACATTTTATCGAATGGCGGACTTACCATTAATATACAAATATAATTCAAGCGAAGTACAAGCTACAACTTCCACAACTGATGTTAGGACTTACATTCAAGGTTACGGTAAGAAGAAAACTAAGACTGAAACGAAGAATTATAATCCAGTTAAACCACCCAACTTAAATTATACTGGTACATTCATCAAAGAAAGAACATGGAAAACTGAAGTTGTTGGTGCAACTTATTGGAAAGAATTCGAATGCAAATGGGGTAACGAAACACTTGAATGGAATCTTAAGAAAATGTCAAAAGGCGGTAAGCTTGATGTCTTTTTGGATGATGAGCATGTAGGTAGTTACCAATGCTATAACAAAACAGCTACTACAGAGAAAATTGTTATAGCAAAAGGTTTGAATAAAGGTGTTCATCGATTTAAAGCTGTATTCAGAGGTGGTATAGCCGATGTAGATTATAAAGATTCTAAACCGGCAATGTATGTAGGTACAGAGAAATCAACTGTGCTGAACTTAACAGCTGTATTAAAAGGCAGTGACGCTTATCACACTTACGCTGAATATGAATCGCCTAATGTAGATACGTTTGGTTGGTCAGAAGCACCTACTGTGTTTGATGATGATACGTTAGATAAAGATGAATTACTTGAAACAATCAAAGCACAACTCAACGATCAACCAACAGTTGAAGTTTCAACGAACTACTTGGGTAGTATGGAAGAAAAACATTATATTCGTAATGATGATGTGAAAGAAAATCATATGATTCGTTTTATCCATCAACCACTAGGTTATAACTTAGATTTGAAAGTAGTGAAAATAACCGAATCACATCCAGTTGTGAATGAACCAGTAGAAGTTGATTTTAGTAATTCACCTACGGATATTATAAAAATCCAACAACGCATTAACAGAAATATTAAAACAATGAATAATCTGGTGCAAGGCGGTTCACTAAATAGTGGGTCGTCTTTTTCTATGCCAGAAGGTTATTCAGAAATAGTGGGGGTGACATTAATAGATGACTGA

Genome Context

Tertiary structure

PDB ID

902188681d2179e5665261063ae8d02b2e56f03394c9f9e2948cbbcd28fc4841

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8924

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence