Protein

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Genbank accession
AII27498.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MSSRADMIGSGPSSGHYQAGPTPTEEKSMPTYINDELLALGGIVNGILEGGAFPPQGKMPVRWREGMMMYFTEPLDDVYNVGQYKGQKIITSAGVWLYRRERWWKIVDDPSNVIGAVFAYRLTADGTPPSTPPPSSYPPSGWEDTAPVKNSKSEWIWISMAAAYDENTDTYTWNQPTPFSAGVEDGIDGQDGSDGVDGVRGTITVNKETSGSVWNDTEAYNAIINDPRSGGVVLNLDMVNLYNDSEEFSEQRFYSDGVWESFELFVDGNAIVTGTLIGDKIKSDTRITIGGNYDQDVVILDASDVNSRIWVGSTTSTSANFRVTPTGDLYANNGYFGGEVTYQGITGAIGGAVDSSLTNPIQDWSEWFVEDGTSTPTAIMARVTVPRQDYDRVAVVTCVPSLLIATSRTNVDRFGIVWTAANSTGSTLDYHYRVTSVTESGVGYSTTGNAASAFEFVAQNANQAWFKLTNTLAWEVFIPATTSTGDLTIDLKAQFLHATGQAFPVSNFVTFKVPNSTVNVEVSKVNSGISIIN
Physico‐chemical
properties
protein length:533 AA
molecular weight: 57764,12450 Da
isoelectric point:4,36048
aromaticity:0,10694
hydropathy:-0,25141

Domains

Domains [InterPro]
DC_1333
STR
50–533
DC_1333
AII27498.1
1 533
Architecture
STR
STR 50-533
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AII27498.1
1 533
Domain Start End Length (AA) Confidence
N-terminal 1 327 327 0,9379
Central domain 328 522 196 0,0668
C-terminal 523 533 10 0,9781
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-327
Central
328-522
C-terminal
523-533

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPp1
[NCBI] 		1524880 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AII27498.1 [NCBI]
Genbank nucleotide accession
KJ936628.1 [NCBI]
CDS location
range 14125 -> 15726
strand -
CDS
ATGTCAAGTAGAGCAGATATGATTGGTTCAGGTCCAAGCTCAGGTCACTACCAAGCTGGTCCGACACCTACGGAAGAGAAGTCAATGCCAACTTATATCAATGATGAACTCTTGGCGTTAGGTGGTATTGTTAATGGTATCTTGGAGGGTGGGGCATTCCCACCTCAAGGTAAGATGCCAGTGCGTTGGCGTGAGGGTATGATGATGTACTTCACAGAGCCTCTAGACGACGTCTATAATGTAGGTCAATACAAAGGTCAGAAGATTATCACTTCAGCCGGTGTGTGGCTTTACAGGCGTGAGAGATGGTGGAAAATCGTTGATGACCCATCAAATGTTATTGGAGCAGTATTTGCATACCGACTTACTGCTGATGGTACGCCTCCATCAACTCCACCACCATCATCTTATCCTCCAAGTGGTTGGGAAGACACTGCTCCCGTAAAAAATAGTAAATCCGAGTGGATTTGGATTTCTATGGCAGCAGCCTATGACGAGAATACTGACACATATACATGGAACCAACCTACACCTTTTAGTGCAGGTGTTGAAGATGGCATAGATGGGCAGGATGGCTCTGACGGTGTTGATGGAGTGCGAGGTACTATAACAGTCAACAAAGAGACTTCAGGTAGCGTATGGAACGATACAGAGGCATATAACGCTATAATCAATGACCCTCGTTCTGGTGGTGTCGTGTTGAACCTAGATATGGTTAACCTGTATAATGATTCGGAGGAGTTCTCAGAACAACGATTTTATTCAGATGGTGTGTGGGAGTCTTTTGAACTATTTGTGGATGGTAATGCTATAGTAACTGGCACTTTAATTGGCGATAAGATTAAATCTGATACTAGGATTACAATAGGAGGCAACTATGACCAAGATGTGGTAATACTAGATGCTAGCGACGTTAACAGCCGCATTTGGGTTGGTAGTACAACATCAACCTCTGCTAACTTCCGAGTAACACCTACCGGTGACTTGTATGCTAACAATGGCTACTTCGGGGGTGAGGTTACATATCAAGGTATTACGGGTGCAATTGGTGGGGCTGTAGATAGTTCACTCACTAACCCAATACAAGATTGGTCGGAGTGGTTTGTTGAAGATGGTACATCTACACCTACTGCTATCATGGCTCGTGTAACTGTTCCACGTCAGGATTATGACCGTGTGGCTGTTGTTACTTGCGTTCCATCTCTACTAATTGCTACATCACGTACTAACGTTGATAGGTTTGGTATTGTATGGACTGCTGCTAACAGCACAGGCTCTACGCTTGATTACCATTACCGTGTGACATCTGTTACTGAATCTGGGGTAGGATACTCAACTACAGGTAATGCTGCATCTGCATTTGAATTTGTAGCACAGAACGCTAACCAAGCATGGTTTAAACTAACTAATACATTAGCTTGGGAAGTATTTATTCCGGCTACAACTTCAACAGGTGACTTAACAATTGACCTTAAAGCTCAGTTCCTACATGCAACTGGTCAGGCATTTCCTGTATCTAACTTTGTAACATTCAAGGTTCCTAACAGTACGGTGAATGTAGAGGTTAGTAAAGTCAACTCAGGTATCAGTATTATCAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0437fe89b1f6bd0c51dbacfe9cabcff893e83091bde3975b70f7d6e6eac8f11f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6226
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome of a Novel Lytic Vibrio parahaemolyticus Phage VPp1 and Characterization of Its Endolysin for Antibacterial Activities Li,M., Jin,Y., Lin,H., Wang,J. and Jiang,X. 2018 29927621 GenBank