Protein

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Genbank accession
YP_004957911.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSTAYMLEHTQEKAPLVDYAIKNMWGNPELDSQFQIKLARVSGPQGFVNDFAYLGKQRYLPKTLTFFHVFTLGGLDAGFWNFGSRGKSWYPMDQWVRASNIATDRGVVIDVYKGDGSMFPRGETYIMPCFDGVTLVCVPINPNFPLPLDKNLYIHCYSSDINTKNLSPENKRKYTVAYSGGIYIQHEDMERVKLNYDSWKAYDMGMVAFFHNGKIVPIDSISLQPGDLIEAFYDPSIEMILKYKYKSMPDYLSDLDKKRKIILFPGFDDLPKMYRYYDDCHFYITNRRNNHSYYYHRNTEDSVRQLTHQDYGMTADYIEFLANRLIKDDTTKKTTMDDIDITVAYHATRWQFKLGPTSSRINDLYLLEDHSKILQAMTGSNSNITEWTAIELEKSPTNKVLNAICPKLTTEMVRDGLGYNGCSVAMSNNAHYMPWKTPGDPDHDPIYPTPPYTSGLGYTVPPTFVESSTAYEYDADGLLLRLVGITNQEYYAPGEGCTYVEYALGRATTWLDYIITKRDVKLKPNYGFRVYKAKWAIDPNWEPLFQEIPVSTDGVIPSLPNGEEIRALMRDEIPEQVDPELPEGGRPVPPWIDITDEVDQWHIDGDYLVWDIDMINWVGLIVFDSAHLYNEFDLSHIDNSLTFAITHQWPIGGVLLPMEPGQIDIWMNRHPLIENVDYILDFPNVYIINKMWLVEGKQHIQYRGVGLSRNGLVNTSELGFVADGVIGYNGRYNLRIDRPTKTIIKGRLFLTPTVDWAEDIHHGNNLVGLNGWPYEVKHYYSANKYVDKWNTYWGYDDARALDKKISDYLTIHATYKSNAPHNPVYLDKDKYRLYSPFLSLIVNELLLGFMTAPVPSGTEVPYPPRLVDEITRPYQWLLKYDPIILGLDLGYFTVHPYNNWDKVTLTPDQLTFVKTVNDLFLDGKLKIEGHFEVKHV
Physico‐chemical
properties
protein length:936 AA
molecular weight: 107890,19830 Da
isoelectric point:5,35858
aromaticity:0,13248
hydropathy:-0,38397

Domains

Domains [InterPro]
IPR055617
STR
11–935
IPR055617
YP_004957911.1
1 936
Architecture
STR
STR 11-935 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004957911.1
1 936
Domain Start End Length (AA) Confidence
N-terminal 1 49 49 0,5104
Central domain 50 284 236 0,7641
C-terminal 285 936 651 0,0704
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-49
Central
50-284
C-terminal
285-936

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage OBP
[NCBI] 		1124849 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004957911.1 [NCBI]
Genbank nucleotide accession
NC_016571 [NCBI]
CDS location
range 4124 -> 6934
strand +
CDS
ATGTCGACTGCATACATGCTTGAGCACACCCAAGAAAAAGCCCCACTTGTTGATTACGCAATTAAAAACATGTGGGGTAACCCTGAACTTGATTCACAGTTCCAGATTAAACTGGCGCGTGTATCTGGGCCCCAAGGTTTTGTAAACGACTTCGCATACTTAGGTAAGCAGAGATACCTGCCTAAGACTTTAACCTTTTTTCATGTCTTCACTTTAGGTGGACTTGATGCTGGTTTCTGGAATTTCGGTAGTCGTGGCAAAAGCTGGTACCCGATGGATCAGTGGGTTCGTGCTTCTAACATTGCCACAGATCGTGGCGTTGTAATTGATGTATATAAAGGTGATGGTTCGATGTTCCCTCGTGGTGAGACATATATCATGCCTTGCTTCGATGGTGTCACATTAGTCTGTGTTCCTATTAACCCGAACTTCCCGTTACCATTGGATAAGAACCTTTATATCCACTGTTACAGTTCGGACATTAATACGAAGAACCTGTCTCCAGAAAACAAACGTAAATATACGGTTGCTTATTCTGGCGGTATCTATATCCAACATGAGGATATGGAAAGAGTTAAGTTAAACTATGACTCTTGGAAAGCCTATGACATGGGAATGGTTGCTTTCTTCCATAACGGTAAGATCGTACCTATCGACTCCATAAGCCTACAGCCGGGTGATTTGATTGAGGCGTTTTACGACCCTTCCATCGAAATGATCCTGAAGTACAAATACAAATCGATGCCGGACTATTTGTCTGATCTCGATAAGAAAAGAAAAATCATTCTTTTCCCTGGTTTTGATGATTTACCGAAGATGTATCGTTATTATGACGATTGCCACTTCTATATTACTAACCGTCGGAACAATCATTCTTATTACTATCACCGTAATACGGAAGACTCAGTTAGACAGTTAACTCATCAAGACTATGGCATGACTGCCGACTACATTGAGTTCTTGGCTAATCGTCTTATTAAGGATGACACAACCAAGAAAACCACAATGGATGATATTGATATCACTGTGGCTTACCATGCGACTCGTTGGCAGTTTAAATTGGGACCAACCTCTTCTCGCATTAACGATCTGTATTTGTTAGAAGATCATAGCAAGATACTTCAGGCGATGACAGGTTCTAATTCCAATATCACGGAATGGACTGCGATTGAATTAGAGAAGTCTCCAACTAACAAAGTTCTGAATGCCATCTGTCCTAAGCTGACCACTGAGATGGTTCGTGATGGGTTGGGTTATAATGGGTGTTCTGTTGCGATGTCTAACAACGCACACTACATGCCTTGGAAAACTCCAGGGGATCCTGACCATGACCCTATCTATCCAACACCTCCTTATACCTCAGGGCTAGGGTACACCGTCCCTCCGACGTTTGTAGAGAGTTCTACTGCATACGAGTATGATGCTGATGGATTACTCCTGAGACTGGTTGGAATTACCAACCAAGAGTATTACGCCCCGGGTGAAGGTTGTACTTATGTGGAATACGCTTTAGGGCGAGCAACCACTTGGCTGGACTACATCATCACCAAGCGTGATGTCAAACTGAAACCTAACTATGGCTTCAGAGTCTATAAAGCTAAATGGGCTATCGATCCTAATTGGGAACCTCTCTTCCAGGAAATCCCTGTTAGTACTGATGGTGTTATCCCAAGCCTTCCTAACGGCGAGGAGATCAGAGCGCTGATGCGTGATGAAATCCCTGAGCAAGTTGATCCTGAATTACCAGAAGGTGGACGCCCAGTCCCTCCATGGATTGATATCACTGATGAAGTAGATCAGTGGCACATCGATGGTGACTACCTGGTATGGGATATTGACATGATCAACTGGGTTGGTTTAATTGTGTTTGACTCTGCTCATTTGTATAATGAGTTTGATCTCTCTCACATCGATAACTCTTTGACCTTTGCCATTACACACCAATGGCCAATCGGTGGTGTACTGCTTCCGATGGAACCAGGTCAGATTGATATCTGGATGAACCGACATCCTCTAATTGAGAACGTTGACTATATCTTAGATTTCCCCAATGTCTACATCATCAACAAGATGTGGTTGGTAGAAGGGAAACAGCATATCCAGTATCGTGGTGTAGGGCTCTCCCGTAATGGGTTGGTTAATACCAGTGAGCTTGGTTTTGTTGCAGATGGTGTTATCGGCTATAATGGTCGTTATAACCTCCGCATCGACAGACCAACTAAAACGATTATCAAAGGTCGTCTGTTCTTAACACCGACTGTTGACTGGGCTGAAGATATTCATCATGGTAATAACCTGGTTGGGTTAAATGGTTGGCCTTACGAGGTTAAGCATTATTACTCAGCTAACAAGTATGTAGACAAATGGAATACGTACTGGGGTTATGATGATGCACGGGCTCTCGATAAGAAGATCTCTGATTACTTAACCATTCATGCAACCTACAAGTCTAATGCTCCTCACAATCCGGTTTATCTGGATAAAGATAAGTACAGACTTTATAGTCCGTTCCTGAGTCTCATCGTGAACGAGCTATTACTTGGATTCATGACGGCTCCAGTTCCTTCTGGAACAGAGGTTCCGTATCCTCCAAGACTGGTTGATGAAATCACTCGCCCTTATCAATGGTTGTTGAAATACGATCCGATCATTCTTGGTCTGGACTTGGGATACTTCACAGTACACCCTTACAACAACTGGGATAAAGTCACATTAACACCCGACCAACTTACTTTCGTTAAAACCGTCAATGATTTGTTCCTAGATGGGAAACTTAAGATTGAAGGTCACTTTGAGGTGAAACATGTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
007e5084f333c5b4dc3517756ae7e0bdf2f309d1f5a1d65408f02b231050fd43
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2626
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50