Protein

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Genbank accession
YP_010355645.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MTYSFAPNDQPLYVSEGDYVQFRFIAPNQWNTTNTVTITIGDLTQFWLITTIPEDFTPDPFPFNDVIDADLDTMYTTDIVFRPPDGTPSTSLSGLTPDTQAAVVLGSNLGGGIDNYAMRVDYNGNGSFDTGWIQSGGAITVTNGARIRVRLKSSEFTTQFSRLTLVIGTSSARWDILTLSQPTNEPEPFPDFTDLEDQPTNTYCYSEVIRLQGLISSATINTSGNGEWAISSTSNTSTNADGFQVLSGATFTGNDGTVNNGDYLQLRILSSNNALFPVTTNLSIGDALNGDTWSVETGSNPSTNPNSFSFTNVDDAIEDTLVASDEQPATALGIQGLTDGIQVPVVLVSTNSTKVRIKKNNDSVGVFPTTAGNGDKLTLYLQSSPSFNTPLNMQIKVGDRQIPAWQVRTSLGPDTDADWSPPANRNNQIPESFVSSAPVTVTGINRPITIESIAGYPALISIDFDSPVAGPRTFDPLVNSSFYIVVQAALQLNTPETTTIRLGTGNPNQFVWQVTTYATVPPPSTDAAIWYSRKSKKFDGYPIGTVLPVLKEGVGTYGDLDGGNNDRYPGFVPCDGRSLDKNDYFELYTILAGEYGETTNEFNVPDYRNRKLCGIGIVDSTRGNSAFVPITLGSSKGINDPGAEGGYWYFNRVGARGSNPLDQVQGPPGAVGSLDSDFFSLGTVRLTGLETLTDQVIFEINPNSFVTAQVGGLSSITVAAPTHNHAYISAVTEGNEGEASIPWNQPLGRSMMAGSRYGSPNPDEFDARAPENASSQENTDAIRDAWKNFFGSTLGANFQLELTRYYGWKIQMQFEMHGKTFLAVLLVLIFS
Physico‐chemical
properties
protein length:831 AA
molecular weight: 89744,10450 Da
isoelectric point:4,32473
aromaticity:0,09988
hydropathy:-0,26534

Domains

Domains [InterPro]
DC_0346
STR
1–824
DC_0346
IPR037053
ATT
533–608
IPR037053
IPR011083
ATT
569–610
IPR011083
SSF88874
STR
569–642
SSF88874
YP_010355645.1
1 831
Architecture
STR
ATT
STR
STR 1-532 | ATT 533-610 | STR 611-824 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010355645.1
1 831
Domain Start End Length (AA) Confidence
N-terminal 1 747 747 0,7584
Central domain 748 820 74 0,2446
C-terminal 821 831 10 0,1967
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-747
Central
748-820
C-terminal
821-831

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage ACG-2014e
[NCBI] 		1493510 Uroviricota > Caudoviricetes > Pantevenvirales > Chalconvirus > Chalconvirus acg2014e
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010355645.1 [NCBI]
Genbank nucleotide accession
NC_062736.1 [NCBI]
CDS location
range 40740 -> 43235
strand +
CDS
ATGACATATTCGTTTGCACCTAACGATCAACCACTTTACGTATCAGAAGGTGATTACGTACAGTTTAGGTTTATTGCACCTAATCAGTGGAACACCACCAATACTGTAACTATTACTATTGGTGATTTAACGCAGTTTTGGTTGATTACAACCATTCCGGAAGATTTTACTCCCGATCCATTTCCGTTTAATGATGTCATTGATGCAGATCTTGATACGATGTATACTACGGATATAGTATTTCGTCCACCGGATGGCACACCATCTACTTCTTTAAGTGGATTAACACCCGACACTCAAGCAGCTGTAGTACTTGGATCTAATCTTGGTGGAGGCATCGATAATTATGCGATGCGTGTTGATTATAATGGCAATGGAAGTTTTGATACGGGGTGGATTCAAAGTGGTGGAGCTATAACTGTAACAAATGGTGCAAGAATTCGAGTTAGGTTAAAATCTTCTGAGTTTACGACACAGTTTTCAAGATTGACACTTGTTATTGGTACATCTAGTGCAAGATGGGATATCTTAACTCTATCACAACCAACAAATGAACCGGAACCATTTCCAGATTTTACAGATTTAGAAGACCAACCGACAAACACATATTGTTATAGTGAGGTCATTAGATTACAGGGATTAATTTCTTCTGCTACTATTAATACCAGTGGCAATGGTGAATGGGCAATTTCATCGACAAGTAATACTTCAACAAACGCAGATGGATTTCAAGTTCTTTCTGGAGCAACTTTTACCGGTAATGATGGAACTGTGAATAATGGTGATTACTTACAGTTAAGAATTTTGAGTTCAAATAATGCTTTATTTCCAGTTACAACTAATCTTTCGATTGGAGATGCTCTCAATGGAGATACTTGGAGTGTAGAAACGGGTTCAAATCCTTCAACTAATCCCAACTCATTCTCATTTACTAATGTAGATGATGCAATTGAAGATACACTTGTGGCATCAGACGAACAACCTGCAACCGCTCTTGGAATTCAGGGATTGACAGATGGTATTCAGGTTCCAGTAGTATTAGTTTCTACTAATTCTACCAAAGTTCGTATTAAGAAAAATAATGATTCTGTTGGAGTATTCCCCACAACAGCAGGAAATGGTGATAAATTAACTCTTTATCTACAATCATCACCTTCGTTTAATACTCCCTTAAACATGCAAATTAAGGTTGGTGATCGACAGATTCCTGCATGGCAGGTAAGAACTAGTCTTGGACCAGATACTGATGCTGATTGGAGTCCACCAGCAAACAGAAATAATCAAATTCCTGAGTCTTTTGTTTCTAGTGCTCCAGTTACTGTTACTGGCATTAATAGACCAATCACAATTGAAAGTATTGCTGGATATCCTGCATTGATTTCTATTGATTTTGATTCTCCTGTAGCAGGTCCAAGAACATTTGATCCTCTTGTAAATTCTTCGTTTTATATTGTAGTACAAGCAGCATTACAACTTAATACACCAGAAACCACAACAATTAGACTTGGTACAGGAAATCCAAATCAATTTGTTTGGCAAGTTACAACATATGCTACAGTTCCACCCCCATCTACTGATGCTGCTATTTGGTACAGTAGAAAATCTAAAAAATTCGATGGGTATCCAATTGGAACAGTTCTTCCTGTTCTTAAAGAAGGTGTTGGTACTTATGGAGATTTAGATGGTGGAAATAATGATAGATATCCTGGATTTGTTCCATGTGATGGTCGTTCATTAGATAAGAATGATTACTTTGAATTGTATACTATTCTTGCTGGGGAGTATGGTGAGACTACTAATGAATTTAACGTTCCTGATTATAGAAACAGAAAATTGTGTGGCATTGGTATTGTAGATAGTACCAGAGGTAATTCGGCATTTGTGCCAATTACTCTAGGATCTTCAAAAGGTATCAATGATCCTGGTGCTGAAGGTGGATATTGGTATTTTAATAGGGTTGGTGCTCGTGGATCAAATCCTTTGGATCAAGTTCAAGGACCTCCTGGTGCTGTAGGAAGTTTAGATAGTGATTTTTTCTCTCTTGGAACAGTTAGACTAACTGGATTGGAAACACTTACTGATCAAGTTATCTTTGAAATTAATCCTAATAGTTTTGTTACAGCACAAGTTGGAGGTCTGTCTTCTATTACTGTTGCCGCTCCTACACATAATCATGCCTATATTTCTGCAGTTACAGAAGGTAATGAGGGCGAAGCTAGTATTCCATGGAATCAACCATTAGGTAGATCTATGATGGCAGGTTCACGATATGGTTCACCAAACCCAGATGAATTTGATGCTAGAGCACCTGAAAACGCAAGTTCACAGGAAAATACAGATGCAATTCGAGATGCATGGAAAAACTTTTTTGGCAGTACTCTTGGTGCTAATTTTCAGTTAGAATTGACAAGATATTATGGTTGGAAAATACAGATGCAATTCGAGATGCATGGAAAAACTTTTTTGGCAGTACTCTTGGTGCTAATTTTCAGTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4c27198261bc4d04b5f108fe41eb81c05d5ef495ff8d6aaabe6121227fcdd174
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6344
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecological redundancy of diverse viral populations within a natural community Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B. 2015-03-20 — GenBank