Protein

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Genbank accession
WPJ72062.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPQFSQPKGSVSKETNKEAVARRFGCKKSEVVYAKPGQSLNGYKVIYDKITERAYALPSNLGAVTITSLTDGILVHSGGTVDLGALAVSRGEFVTLGQDFNSGFTLSVKNEVVIDGTSLYIWTGSFPKTVSSGSSVSTSGGIGTNAWQRIGASGLKQDLLDANYGSKIISTKQSITGSSLRTQFDKNSDTLSIKDFGALGDGTTDDTAAIQAALDAVAVLGKKLYAPAGVYRVGALTYQPTTQTPLVLIGDGVTNTIFRKIGSSTSAMLLVGKNPSTFFIKNCVISGITFDAVDKVSYAALQMLDCWFTELDGVLCNGGQVGLEMLTPIFVKADSVTCQNSDTGLSISYWAGESFPSSQPGVIEFNNSVFQSNSLIGVKFNDGENLILSNCAIEGNGTTPGDTSQGGVYVGANVGRFMSGTIVPGLVMRDCHLESNKGFAGVAAYSGRTLLDNVFFWEGGTNTTHDVAFDGGLYTLRNCTAASPKAGGNVYEGPVVGTGNMIIQCAMRTLSINESKTTVFNDAALVTPFVKIGGPTGPAASLTFQNSATYWEMKQLASSSFGLYNGTSLVNYCDTSGNFIPGSDNNKSNGIPSNRWSVVYAGTGSISTSDREAKQDETELSDKEREVAVKLKGLIRKYKFKDAVEEKGEDARWHVGIIAQDVKAAFEEAGLVAEEYGILCYDSWEEEPADIVVHPAQEEVTMEVPDEKGGITKIVVQPAVEEWEEVRKPARKAGSRYGVRYDELLAFIIATM
Physico‐chemical
properties
protein length:753 AA
molecular weight: 80198,19320 Da
isoelectric point:5,02374
aromaticity:0,08632
hydropathy:-0,11580

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–93
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR012334 IPR036388
DC_0071
STR
1–703
DC_0071
IPR040775
RBD
88–152
IPR040775 IPR011050 Coil
IPR024535
ENZ
193–399
IPR024535 cd10144
IPR030392
CHP
610–672
IPR030392
IPR030392
CHP
610–753
IPR030392
WPJ72062.1
1 753
Architecture
ATT
STR
RBD
ATT 1-162 | STR 163-703 | RBD 704-753
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPJ72062.1
1 753
Domain Start End Length (AA) Confidence
N-terminal 1 206 206 0,9901
Central domain 207 513 308 0,9870
C-terminal 514 753 239 0,9710
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-206
Central
207-513
C-terminal
514-753

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CRW-SP2
[NCBI] 		3079598 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Paratyphi B
[NCBI] 		57045 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPJ72062.1 [NCBI]
Genbank nucleotide accession
OR464140.1 [NCBI]
CDS location
range 30057 -> 32318
strand -
CDS
ATGAATCCGCAATTTTCTCAGCCGAAAGGCTCAGTGTCAAAAGAAACCAACAAAGAGGCCGTCGCCCGGCGTTTTGGATGTAAGAAATCCGAAGTCGTCTATGCAAAACCTGGTCAGTCCCTCAATGGCTACAAAGTGATCTATGACAAGATCACAGAACGCGCCTACGCGCTTCCTTCTAATTTGGGAGCCGTTACCATCACCAGCCTGACAGACGGCATTCTTGTTCACTCGGGGGGTACTGTTGACCTGGGTGCGCTGGCCGTATCACGTGGTGAATTTGTTACCTTGGGACAAGATTTTAATTCTGGGTTTACTCTAAGTGTGAAAAATGAAGTAGTGATCGATGGTACTTCACTTTATATTTGGACAGGTTCTTTCCCGAAAACTGTTTCTTCTGGCAGTTCTGTGTCGACTTCCGGTGGTATTGGTACGAATGCGTGGCAACGTATCGGGGCTTCTGGCCTGAAACAAGATCTGCTGGATGCAAACTACGGTTCAAAAATCATATCGACCAAACAATCAATTACTGGGTCTTCGCTCCGCACACAGTTTGACAAGAATTCAGACACCCTCAGTATTAAAGATTTTGGTGCTTTGGGTGATGGTACCACGGATGATACCGCTGCAATCCAGGCCGCTCTGGATGCCGTGGCGGTATTGGGGAAAAAACTTTACGCACCCGCTGGAGTTTACCGGGTTGGTGCCCTCACTTATCAACCAACAACTCAAACTCCTTTAGTTCTTATCGGTGATGGAGTGACCAATACCATTTTCCGTAAAATTGGTTCAAGCACTTCCGCTATGTTGTTGGTCGGTAAAAATCCTTCAACGTTTTTTATCAAGAATTGTGTCATATCTGGCATCACATTTGATGCAGTTGACAAAGTATCTTATGCTGCGTTGCAAATGCTGGATTGCTGGTTTACGGAATTGGATGGAGTTCTGTGTAACGGCGGCCAGGTTGGTTTAGAGATGTTGACACCGATCTTTGTCAAGGCTGACAGTGTTACTTGCCAAAATTCGGATACGGGTTTGAGTATTTCTTATTGGGCTGGTGAATCCTTCCCAAGTAGCCAGCCTGGTGTGATAGAATTCAACAACTCTGTTTTCCAATCAAACAGTCTGATCGGTGTTAAATTCAACGACGGGGAAAACCTGATACTGAGCAACTGCGCCATCGAAGGTAACGGTACTACTCCGGGAGACACCTCTCAAGGTGGAGTGTATGTCGGCGCTAATGTTGGTCGCTTTATGTCTGGAACGATCGTCCCCGGTTTAGTAATGCGGGATTGCCACCTTGAATCCAATAAAGGGTTTGCTGGGGTTGCGGCTTACAGCGGAAGAACTCTTTTGGATAACGTATTCTTCTGGGAAGGCGGCACGAACACCACGCATGACGTAGCATTCGATGGTGGGCTGTATACCTTGAGAAACTGTACCGCCGCTTCGCCGAAGGCTGGTGGGAACGTCTATGAAGGACCAGTCGTCGGCACAGGAAACATGATCATACAGTGTGCAATGCGCACCCTTTCGATAAATGAATCGAAAACGACTGTTTTTAATGATGCTGCGTTGGTCACTCCTTTTGTTAAGATAGGTGGTCCCACTGGTCCAGCTGCGTCTCTGACGTTCCAAAACTCAGCGACTTATTGGGAAATGAAGCAATTGGCATCTTCTTCCTTTGGTTTGTACAATGGTACTTCTCTTGTCAACTATTGTGATACTTCTGGAAACTTTATACCCGGCTCTGATAACAATAAGAGCAATGGTATCCCAAGCAATCGATGGAGTGTCGTTTATGCTGGTACAGGTTCCATCAGTACATCTGATAGAGAGGCAAAACAAGACGAGACCGAACTCTCTGATAAAGAAAGAGAAGTAGCGGTCAAGTTGAAAGGTCTAATCAGAAAGTATAAATTCAAAGATGCTGTTGAAGAGAAGGGTGAAGACGCGCGCTGGCATGTTGGTATAATTGCACAAGATGTCAAGGCCGCCTTTGAAGAAGCGGGACTTGTTGCTGAGGAATACGGCATTCTCTGCTATGATTCTTGGGAAGAAGAACCTGCCGATATCGTCGTTCACCCGGCTCAAGAAGAAGTGACGATGGAAGTACCGGACGAGAAAGGTGGGATTACCAAAATTGTTGTCCAGCCCGCTGTTGAAGAGTGGGAAGAAGTCAGAAAACCTGCTCGGAAGGCTGGATCAAGGTACGGAGTGAGATATGATGAATTGCTTGCATTCATCATAGCCACTATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1655acc287c128bbba4c4d94cd09b90a789a557ac04fd02cab3c698cab7588de
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7764
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50