Protein

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Genbank accession
YP_009320892.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,93
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQMLNFFEDQPRAGAELALTSAFAIGDSLAHGTYTYNGSLGHEESIARQGTGGTLLQSSGFQIYRPGGVSAGEAIARAWALIGFPSGVSVPPLDAANTDYWDPNWQAPIGSAGRGHDHFYVCNSNIRGFVGKKGEIPSNVNINYQSPSFPTKVYVCRGSTTNIAAQATRKVYVQDWYNVTPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPINYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPSNVVSTYVGDDLNPSYPAAGDYYQPLATVWLGLPNTNSTIILTTEVIMGNINTAGQRVSTYSGQAWRVQGRRQQSYTAGDGIFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEMAFRRNGYIYTVKNLGNGNVELGVIIHAAEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 64259,84910 Da
isoelectric point:6,83207
aromaticity:0,11973
hydropathy:-0,22546

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
YP_009320892.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009320892.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,6116
Central domain 11 233 224 0,8730
C-terminal 234 593 359 0,8081
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-233
C-terminal
234-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 100268_sal2
[NCBI] 		1813783 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus 100268sal2
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009320892.1 [NCBI]
Genbank nucleotide accession
NC_031902 [NCBI]
CDS location
range 111840 -> 113621
strand -
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTACGAGGCTGCTCTAGGTGATGCAGGTAATGGGTATTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAATGGTACTCATAGGGGTTTCCTTAATGGTACACAATCTCAGGTTGGCCAGATGCTAAACTTTTTTGAAGATCAACCACGTGCTGGCGCTGAGTTAGCTCTAACTTCTGCTTTTGCAATCGGTGATAGTCTAGCTCATGGTACTTATACGTATAATGGTAGTCTTGGTCATGAGGAATCTATTGCTCGGCAAGGAACTGGAGGTACTTTACTACAGTCTTCCGGTTTCCAGATCTATAGACCTGGTGGTGTTTCTGCTGGTGAAGCCATTGCCAGAGCCTGGGCTCTTATTGGGTTTCCTTCAGGAGTTTCAGTACCTCCACTAGATGCAGCAAATACAGATTATTGGGATCCTAACTGGCAGGCGCCTATTGGATCTGCTGGCAGAGGGCATGATCATTTTTATGTATGTAACTCTAATATACGTGGATTTGTAGGTAAAAAAGGGGAGATACCTTCTAATGTAAACATTAACTACCAATCCCCTTCCTTTCCTACTAAAGTATATGTTTGTAGGGGTTCTACGACTAATATAGCTGCGCAAGCCACTAGAAAGGTATATGTACAGGACTGGTATAACGTTACTCCTACTAAGGTTATTTGGTATGTGCTAAATCTGCGCTATTCTAATGGTAATATGGGAGTTTCTGGTAATCCATTTACTGGTTCTGATATCCTTATTTCTCCCTCTAATTTTACTATTAAAGGGGTTAGTTTACCAAATACAGGATATAAATTCATTAACCAGAATGCCTTTGGAAACTTAGGCTATCGCCCTGATATGGAGTATGTTGGTAATAATGCTGCATATACTGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATAGGCTCCAGTAATGGTGGATTGTGGTCACCCATTAACTATGGAGGTGCAGCTTCCCAAATTAGCCTTTATAAATTTGGTGTAGGTAAACAATGGTATGTAGATACTAATACTAACTCCATTGGTAATGAACATGGACCTGTATGGAGTCCTAGTACAGTACCTTTAAGGTTATTCCCTAGCAATGTTGTCAGTACTTATGTTGGGGATGACCTCAATCCATCTTATCCTGCAGCAGGTGATTACTACCAGCCTTTAGCAACAGTCTGGTTAGGACTGCCTAACACCAACTCTACTATCATATTAACTACCGAAGTTATTATGGGCAACATTAACACTGCGGGACAACGTGTTAGTACATACAGTGGGCAGGCCTGGCGTGTACAAGGTAGACGCCAACAGAGTTACACTGCGGGGGATGGTATATTTCACCAAATCCTTACCCTACCACCTGGCTATCTAGTACCATATCACAGTACAACTTCCTATAGTTACACACAAACTTGGGCTAGTAGACCTGATGAGATGGCTTTTCGTAGAAATGGGTATATTTATACAGTAAAAAACCTTGGTAATGGTAACGTTGAATTAGGAGTTATTATCCATGCTGCCGAAGCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd065c191d7c66094866002753b6942b19408c2db512b8aa0cc41396923583b6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2514
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of a lytic Siphoviridae Bacteriophages infecting several subspecies of Salmonella enterica Paradiso,R., Lombardi,S., Iodice,M.G., Riccardi,M.G., Orsini,M., Bolletti Censi,S., Galiero,G. and Borriello,G. 2016-12-29 — GenBank