Protein

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Genbank accession
AWN09165.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,61
Protein sequence
MKTYPYDPRGINPECQFTEERIIDSDDPKDRVVMLDHRPFFEGLEVKLAGASIPLTRGKDYELEYALTPLDDSVTTPVFCGVQLINPDLRGAVVFTGQMLGGTFYSGLIEMLDELVKALNNPTSADWLLLDGRPSLYPATPSATSWADMLNKKYVASAVHDVELDAGAANDAIREKLAALKDEVIALGVEIEAFNYPAHIAATNPHDTTVAQNGAHPVDLKTPDTFLAYGKNLRTLTAEIRALGLQQSDIDKYISKWVSKESKGVFTAAISGTRALFRSPNGESEITFSTDAFTLKSNGSIILATGYMPGDTVTRFMEWKAGVNTLRIESTGSALGMDRLTLNGTTLLTTTALMGYQQDPGTGGGTVDPDDNKLYIEGRNGITFTGKGSKADPVTGTVTATKATTTAAGVVKLKKGPGTETSGVAATPDSLTTYEGDLSSYVLKATLLNNKAMTDGSRVLTKTDLGLGNADNTADLDKPLSDALAEAVTGLSPKGHHHDWSELAIPTASQTTLGIARYSNNQAGLAAGRGVTPNVLNELVKRLDVVAGMLASAKENTVTEFAAVRGKTWTVGASRTTLAVTDLNYFYLFDGQRKEGTVSGSIDLQTTPMFQWFSPDNQMERTWQNAVINSGAGVSYTGFEAPFPFNTPRGSQIGLTLNGMGNLSVVTVLAKTRLHCVTGKLKIWVSGGGAVTVYVDGEIVGAGLTQPAYLEVNVTAGWEEHCLAIKAECNDAAKAAAVRFEVSDGDYPLYASGTHTKVAVLQEFVTPMTNLRHYLYVNMITSALYSRAEPILDPLMNLERGYIGYIDVPSTGLVAGDTYTFDTTFDYGPSSELNAHFDVRKAHGVVKSDWSLTDNLRMLPLNKLDPLPTQWVFAKTRSNTSGSHLSRLDRGLFSYHFVSDTQATLDVQLFVANKYKTPYCWFTPYNPKEGNQATFEGSIVVDVESTEQLTDNNRQITFMALAKANSNTAAHRVLGWQSADNALTYGVIDNLATGSVGHNSKRLTTTTSPIAITPTVIKDTTVTNAAALDYYLDNYALPAYITPGCRWLLRYRYIVETRTLRLSVLSTAPDVATIRVQELEYVLPFDAVDYFDGEALGVEVQGIGVNEYVTVNHGLVEPKTTEVDISRFHYLRSLLESYIDRRTDTTASGFEDYTSKLVSVKNFGDNLDYPVTEYIVLPSTGEGYPDISHRGQLPLPFHRRMVNRGAAMPGMPSGYTWKGGVWKNGLILSYRPTRSDEYVTRVNVTMNSNYPGYIVVGSVADPKNTVAFNGTGTDEVNYVELGAKKPQQRVFIVFTPPAGEVPPLNATFTVTGINQLGNTTFIMRDTVSLDMRCGGDVLQLEKRNPYHITSAVWTWLLSVLATERQSAGNNSGEWAS
Physico‐chemical
properties
protein length:1376 AA
molecular weight: 149584,67200 Da
isoelectric point:5,31401
aromaticity:0,08866
hydropathy:-0,19608

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AWN09165.1
1 1376
Domain Start End Length (AA) Confidence
N-terminal 1 568 568 0,9760
Central domain 569 1037 470 0,8833
C-terminal 1038 1376 338 0,3593
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-568
Central
569-1037
C-terminal
1038-1376

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SPAsTU
[NCBI] 		2136797 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWN09165.1 [NCBI]
Genbank nucleotide accession
MH221129 [NCBI]
CDS location
range 224498 -> 228628
strand +
CDS
ATGAAAACGTATCCTTACGATCCTCGGGGCATTAATCCCGAGTGTCAATTCACTGAGGAACGTATCATCGACTCCGACGATCCTAAAGACCGGGTGGTGATGCTTGATCATCGCCCGTTTTTTGAAGGTCTCGAGGTAAAGCTCGCCGGTGCATCCATTCCGTTGACACGCGGAAAGGACTATGAACTGGAATACGCGCTGACACCGTTGGATGATTCGGTGACGACCCCCGTGTTTTGTGGGGTGCAACTTATTAACCCTGATTTACGCGGGGCAGTGGTCTTTACAGGCCAGATGCTCGGGGGTACGTTTTACAGCGGCTTAATTGAAATGCTTGACGAGTTGGTCAAAGCATTGAACAACCCAACGTCTGCGGATTGGCTGCTGTTGGATGGACGACCATCGCTATATCCGGCGACTCCATCTGCCACCTCTTGGGCGGATATGCTCAACAAAAAGTACGTCGCTTCTGCGGTGCATGATGTTGAGTTAGATGCCGGTGCGGCTAACGACGCCATCCGTGAAAAATTAGCCGCGTTGAAAGACGAAGTTATTGCGTTGGGTGTGGAGATTGAAGCCTTCAACTACCCAGCGCATATTGCGGCGACCAATCCGCACGATACCACTGTCGCGCAGAATGGTGCTCACCCTGTAGACCTGAAAACCCCGGATACGTTCCTGGCTTACGGGAAGAATCTCCGTACATTAACCGCTGAGATTCGGGCGCTCGGGTTACAGCAGTCTGATATCGACAAGTACATCTCTAAATGGGTATCGAAAGAATCCAAAGGGGTGTTCACTGCCGCGATTAGTGGCACGCGCGCGCTGTTCCGTTCACCGAATGGGGAATCGGAGATTACGTTCTCGACCGACGCGTTTACGTTGAAGTCTAACGGATCGATTATCCTCGCTACCGGGTATATGCCTGGCGATACGGTTACACGGTTCATGGAGTGGAAAGCGGGCGTCAATACCCTGCGTATCGAATCCACGGGTTCTGCGTTGGGAATGGACCGTTTGACACTCAACGGGACGACGCTGCTGACAACCACCGCGTTGATGGGGTATCAGCAAGACCCTGGTACTGGCGGTGGTACAGTCGACCCTGACGATAATAAGCTGTATATCGAAGGGCGTAACGGCATCACCTTTACTGGTAAAGGGTCAAAAGCTGACCCTGTAACCGGCACGGTGACTGCGACGAAGGCAACCACTACTGCAGCGGGTGTGGTGAAACTGAAGAAGGGGCCGGGTACTGAAACGTCCGGCGTTGCGGCGACCCCTGATTCGCTGACTACGTACGAAGGTGACTTGTCATCCTACGTGTTAAAAGCCACCCTGTTAAACAACAAAGCGATGACCGACGGTTCTCGTGTGTTAACGAAAACTGACCTGGGCCTGGGTAACGCGGATAATACCGCCGACCTTGATAAGCCTCTGTCGGATGCGCTGGCTGAAGCGGTAACTGGTCTTAGCCCGAAAGGGCACCACCACGATTGGTCGGAGCTTGCAATTCCAACCGCCTCACAAACCACTCTGGGTATTGCTCGTTACTCAAACAACCAAGCTGGCTTAGCCGCAGGTCGTGGGGTAACTCCTAACGTACTCAACGAGCTGGTTAAGCGTCTGGACGTGGTGGCAGGTATGCTGGCCAGTGCGAAGGAAAATACAGTTACTGAGTTTGCTGCTGTACGTGGCAAGACCTGGACTGTGGGGGCTTCGAGAACCACTTTAGCGGTCACTGACCTGAACTACTTTTATCTGTTCGATGGGCAGAGAAAAGAAGGGACGGTGTCGGGGTCGATTGATCTGCAAACCACACCAATGTTCCAATGGTTCTCTCCGGATAACCAGATGGAGCGTACGTGGCAGAATGCAGTAATCAACTCCGGGGCGGGGGTGAGCTATACCGGGTTTGAAGCGCCCTTCCCGTTCAATACCCCCAGAGGCTCTCAGATTGGCTTGACACTCAACGGCATGGGCAACCTGTCCGTTGTAACGGTGTTGGCGAAAACACGCTTACATTGCGTTACAGGCAAGCTGAAGATATGGGTAAGCGGTGGTGGGGCAGTAACCGTATACGTAGATGGGGAAATCGTAGGGGCTGGGTTAACTCAACCTGCTTATCTCGAGGTGAACGTAACGGCAGGATGGGAAGAACATTGCTTAGCGATTAAAGCGGAATGTAACGATGCAGCAAAAGCAGCAGCGGTTCGTTTCGAAGTCAGCGACGGCGATTACCCACTGTACGCCTCCGGAACACACACCAAGGTTGCTGTGTTGCAAGAGTTCGTTACGCCGATGACCAATCTGCGTCACTACCTCTACGTAAACATGATTACCAGTGCGCTGTATTCACGTGCGGAACCTATCCTTGACCCACTGATGAACCTGGAGCGTGGTTACATCGGTTATATCGATGTGCCGAGTACCGGGTTAGTGGCTGGAGATACGTATACGTTCGACACCACTTTTGACTACGGACCTTCATCCGAGTTGAATGCGCATTTCGATGTTAGAAAAGCGCACGGTGTGGTGAAAAGCGATTGGTCATTAACCGATAACCTTCGGATGCTCCCACTCAACAAACTCGACCCGTTGCCTACGCAGTGGGTGTTTGCTAAGACACGTTCGAATACGTCGGGTAGCCATCTGTCTCGTCTTGACCGCGGGTTGTTCAGTTACCACTTCGTTTCTGACACACAAGCCACGCTGGATGTCCAGTTGTTCGTTGCCAACAAATACAAAACACCGTATTGCTGGTTTACGCCGTACAACCCAAAAGAGGGTAACCAAGCGACCTTCGAAGGGTCGATAGTAGTCGACGTCGAGAGCACCGAGCAGCTGACCGATAACAATCGTCAGATTACGTTCATGGCGCTGGCAAAAGCGAACAGCAACACTGCCGCTCACCGGGTACTCGGTTGGCAGAGTGCGGATAACGCTTTAACGTACGGGGTAATCGATAACCTGGCCACGGGCTCAGTGGGGCACAACAGTAAGCGGCTGACTACAACCACGTCACCAATTGCGATTACGCCTACGGTCATTAAAGACACAACCGTCACAAATGCCGCTGCACTGGATTATTATCTTGACAACTATGCATTACCTGCGTATATCACGCCGGGATGTCGTTGGTTGCTGAGATACCGTTACATTGTGGAAACAAGAACGCTCCGCTTGTCGGTGCTGTCTACGGCTCCAGACGTGGCAACTATCCGTGTGCAGGAGCTGGAATATGTCTTACCGTTTGATGCGGTGGACTATTTCGATGGTGAAGCGTTGGGTGTGGAAGTGCAAGGTATCGGGGTCAATGAATACGTGACGGTTAACCACGGTTTAGTAGAACCTAAAACGACCGAGGTAGACATCTCACGTTTCCATTACCTGCGTTCGTTGTTAGAGTCGTACATCGATCGTAGAACCGATACAACGGCGAGTGGGTTCGAAGACTACACCTCGAAACTGGTGAGCGTCAAGAACTTTGGTGACAACCTCGATTACCCGGTTACGGAGTATATTGTGTTGCCGTCAACCGGTGAAGGTTATCCTGACATCTCGCATCGTGGTCAACTGCCACTACCTTTCCATCGTCGGATGGTTAATCGTGGTGCAGCAATGCCGGGAATGCCGTCAGGCTACACCTGGAAAGGGGGTGTGTGGAAGAATGGGTTGATATTATCTTATCGTCCAACGCGTAGTGACGAGTATGTCACCAGAGTTAATGTGACGATGAATTCTAACTACCCAGGCTACATCGTCGTCGGTTCAGTGGCTGACCCGAAAAATACGGTGGCCTTTAATGGCACCGGTACGGACGAGGTTAACTACGTTGAACTCGGCGCGAAAAAACCACAGCAGCGTGTTTTCATTGTCTTTACACCGCCTGCAGGTGAAGTACCACCACTGAACGCTACGTTCACCGTGACGGGTATTAACCAGCTAGGTAACACCACCTTTATCATGCGTGACACAGTTTCCCTGGACATGCGTTGCGGTGGGGATGTATTGCAGTTGGAGAAACGCAACCCGTACCACATCACGAGCGCGGTGTGGACATGGCTGTTGAGTGTATTGGCAACGGAACGCCAAAGTGCAGGCAACAACTCGGGTGAGTGGGCCTCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
aab5d417d5001e1c351ed66be3204d1eff335f0e6096cec57c3163348c98f54b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7010
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence for lytic Bacteriophages STsAS and SPAsTU against Salmonella enterica serovar Typhi and Paratyphi A Sanirbandha,C., Yukgehnaish,K., Sivachandran,P., Lee,S.Y., Lalitha,P. and Ravichandran,M. — — GenBank