Protein

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Genbank accession
YP_010093461.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MATIEDLANQVGELTDATTDLLTEVNGQKGRLENLADGAQDSANDAQSHANASAGSAIDSSNYANDSAGSAQQSATSAAEAKTYRDQAEEISGLDTVEEAVDLALDARHFGVLSEAEAEAIRADNEEECAASGFVHFGKAPYSTGNDRRTPINEGLSAPFVSDLTNRLLLGINENHSSAGIRGNSKTIRPFVNIAGITTELTHINNNGTSTYNGSNYIYFPPAPNGTVTYDSATGVITDFTKEVDNKYGDVAADLNEAVARAFEGDCRNGDFRNGTTDWSGSGTTISASANELTLTADSGIGSRYATSARNEFWDIGDVVKVKLDILRVGSTGTLLAYWWGQTDATQSVEATPDEWYTMEFTFTVDNVSSNSTKNLYAGTSSNIPEGGQIKIRNVSYTKVTNEVVTERVDMWGFEQWHEEVTDGEVFDCVQSRATTFGDTDVPTVLSKRPLSYFQVYDGQFEDPSAINDQYRCVDWNAITDVQKKKVAAYLKEKLFVGENGNLVNVRIRQRTIAGAGNGDWRNIDSIGSGSTSISFDGKYLAAQGVLDSKATFANGTGCYFSNGAPYEVKSLAETGVFVVNGGGGSATPNTSVAYKGECYFLVCGTVPRLNQGMYVVGLNEHGSVADVSGKKWYETSEEFNTLADCFNQEKISHD
Physico‐chemical
properties
protein length:655 AA
molecular weight: 70399,82320 Da
isoelectric point:4,48553
aromaticity:0,09008
hydropathy:-0,42534

Domains

Domains [InterPro]
DC_1387
STR
2–655
DC_1387
YP_010093461.1
1 655
Architecture
STR
STR 2-655
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.245.O._10N.261.54.C7
[NCBI] 		1881236 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010093461.1 [NCBI]
Genbank nucleotide accession
NC_055736.1 [NCBI]
CDS location
range 9203 -> 11170
strand +
CDS
ATGGCAACAATAGAAGACTTGGCAAATCAGGTAGGGGAACTTACTGATGCCACAACAGACCTATTAACGGAAGTTAATGGACAAAAAGGAAGGCTAGAGAATTTAGCAGATGGTGCACAAGATAGTGCTAATGACGCTCAATCCCACGCCAATGCCTCGGCAGGAAGTGCAATCGATTCTAGCAACTACGCTAATGATTCAGCAGGTAGCGCACAACAGTCTGCAACCAGTGCCGCAGAGGCTAAAACATATCGTGACCAAGCAGAAGAAATCTCTGGTTTAGACACCGTAGAAGAAGCCGTTGATTTAGCACTAGATGCTCGACACTTTGGTGTATTGAGTGAAGCCGAAGCTGAGGCTATCCGCGCAGATAATGAAGAAGAATGCGCTGCTAGTGGTTTTGTGCATTTCGGTAAAGCCCCCTATAGTACAGGGAACGATAGGCGCACGCCAATCAACGAAGGGCTATCAGCTCCTTTTGTTTCCGACCTCACAAACAGGCTGCTCTTAGGGATTAATGAGAATCATTCCTCAGCAGGAATCAGGGGGAATAGTAAGACCATACGCCCTTTTGTGAACATCGCTGGAATTACTACAGAGCTGACCCACATAAATAATAATGGGACCAGTACTTATAATGGGTCAAACTATATATATTTCCCCCCTGCACCCAACGGCACAGTCACTTATGACTCCGCCACAGGTGTTATCACTGACTTTACCAAGGAAGTTGACAATAAGTATGGTGATGTAGCAGCCGATTTGAATGAAGCTGTTGCAAGGGCTTTTGAGGGTGACTGTAGGAATGGTGATTTTCGCAATGGTACAACCGACTGGTCGGGTTCAGGGACTACGATCTCAGCAAGCGCCAACGAGTTAACATTAACCGCAGACTCAGGAATTGGTTCTAGGTATGCAACCTCTGCAAGAAACGAGTTCTGGGATATAGGAGATGTCGTAAAGGTTAAGCTCGATATTTTACGTGTGGGTTCGACTGGGACGTTACTTGCTTACTGGTGGGGACAAACAGACGCAACCCAATCTGTCGAAGCAACCCCCGATGAATGGTACACCATGGAGTTCACCTTCACTGTAGATAACGTTTCGTCGAATTCAACGAAAAACCTTTACGCTGGTACTAGCTCTAATATTCCTGAGGGTGGCCAGATTAAGATTAGAAACGTATCTTACACCAAAGTAACCAACGAAGTAGTAACCGAACGTGTAGACATGTGGGGCTTTGAGCAGTGGCATGAAGAAGTAACCGATGGTGAAGTATTTGACTGTGTTCAATCACGAGCTACTACCTTTGGTGATACTGATGTACCTACTGTTTTATCTAAACGCCCACTAAGTTATTTCCAAGTGTATGACGGTCAGTTTGAAGACCCTAGTGCCATCAATGACCAATACCGCTGTGTTGACTGGAATGCCATTACTGACGTACAGAAGAAGAAAGTAGCTGCTTACCTGAAAGAGAAACTGTTTGTAGGTGAGAATGGTAACTTGGTTAATGTACGTATTCGTCAGCGTACTATTGCAGGTGCAGGTAATGGGGATTGGAGGAATATTGATAGTATTGGTAGCGGCAGCACCTCAATTTCTTTTGATGGTAAATACCTAGCAGCCCAAGGCGTTTTAGATAGTAAAGCTACCTTTGCAAATGGTACGGGGTGCTACTTTAGTAATGGTGCTCCTTATGAAGTTAAATCCCTAGCAGAAACGGGGGTATTTGTGGTTAATGGGGGAGGGGGTAGTGCTACCCCTAATACAAGTGTTGCTTACAAAGGTGAATGCTACTTCCTAGTATGTGGTACTGTCCCAAGATTGAACCAAGGAATGTATGTGGTTGGTTTAAATGAACATGGTTCTGTGGCAGATGTATCTGGTAAAAAGTGGTATGAAACTTCCGAGGAGTTCAACACATTAGCCGACTGCTTTAATCAGGAGAAAATCAGCCATGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0cd33f1feea099f040921546a80cd24478b3a2365441ff1538985478635c6535
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8753
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank