Protein

View in Explore
Genbank accession
QDH45594.1 [GenBank]
Protein name
structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSLSKYELLVGSSASDLQAKVRTRQATGSVVVYGMFYRGTSYCQAVGTGTLDIGTVTDYRIVSSPNIETFSSLVSGMLAEAQPVGTPVVYNSSLFQVMGKIQPFNMSGQNGANGKTPEIQVANGNIQWKYTTDMSWQNLISLSNLQGASADMRVSNSAIQWKRSSDTEWTTLIGLADLAGPAGATGPQGVTGNTGPAGPQGPKGETGPVGDTGPAGAQGLPGPTGPQGNPGNTGPSGPVGTTGAIGPAGPQGPQGNMGAQGGIGPQGPKGETGPAGPKGNTGDTGPTGSTGPKGDTGVAGPTGAKGDTGVAGPTGAKGDTGPTGPTGSTGPQGVKGDTGPAGPANTLSIGNVSTGTTAAATVSGTSPAQLLNLTLPRGDTGATGPKGDTGAQGPAGTNSVVESLSGTVVTAGAPVALTFTKTYSAPPVVIPIPQWNGTQMITGGAGNITRTGCSFTAMQSRGTLLLASGPFENAAAGVTFRVLVIGN
Physico‐chemical
properties
protein length:487 AA
molecular weight: 47582,22710 Da
isoelectric point:7,65533
aromaticity:0,04312
hydropathy:-0,23101

Domains

Domains [InterPro]
DC_0620
STR
4–253
DC_0620 DC_0620
IPR050149
Unmapped
129–411
IPR050149
IPR008160
STR
180–235
IPR008160 DC_1453
QDH45594.1
1 487
Architecture
STR
STR 4-485 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagM_AAM22
[NCBI] 		2588092 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH45594.1 [NCBI]
Genbank nucleotide accession
MK798142 [NCBI]
CDS location
range 10219 -> 11682
strand +
CDS
ATGTCCCTGTCTAAATATGAATTACTTGTTGGCTCCAGCGCATCTGATTTACAGGCTAAAGTCCGTACCAGACAGGCAACCGGCAGCGTGGTTGTCTATGGTATGTTTTATCGCGGAACCTCGTACTGTCAGGCTGTAGGCACCGGCACGCTTGACATCGGTACTGTCACAGATTACCGCATTGTCTCCTCTCCCAATATTGAAACATTCTCCTCACTTGTCAGTGGTATGCTGGCTGAAGCACAGCCTGTCGGAACACCTGTTGTGTACAACTCATCACTCTTTCAGGTGATGGGAAAGATTCAGCCTTTTAATATGAGCGGTCAGAATGGTGCTAACGGAAAGACACCAGAGATTCAGGTTGCTAATGGAAATATCCAGTGGAAGTACACAACAGATATGTCGTGGCAGAATCTCATCTCCCTCAGCAATCTGCAGGGTGCATCTGCCGACATGCGTGTAAGTAACAGTGCCATCCAGTGGAAACGCTCCAGCGACACAGAGTGGACCACGCTGATTGGACTGGCTGACCTTGCCGGACCTGCAGGAGCCACTGGACCACAGGGTGTTACAGGGAATACCGGACCAGCAGGTCCGCAGGGACCAAAAGGTGAAACAGGACCTGTCGGTGACACTGGTCCTGCGGGTGCACAAGGATTACCCGGACCAACAGGCCCACAGGGTAACCCCGGCAATACAGGACCATCTGGTCCGGTCGGTACTACAGGTGCAATTGGTCCGGCTGGTCCTCAGGGACCGCAAGGTAATATGGGTGCTCAGGGTGGGATTGGACCACAGGGACCTAAAGGAGAAACTGGCCCCGCAGGACCAAAAGGTAACACAGGTGATACAGGCCCTACTGGGTCAACCGGTCCGAAAGGCGATACAGGCGTAGCCGGACCCACAGGTGCAAAAGGCGATACAGGCGTAGCCGGACCCACAGGTGCAAAAGGCGATACAGGACCAACTGGTCCCACTGGTAGCACAGGTCCGCAGGGAGTGAAAGGCGATACTGGTCCGGCAGGTCCCGCTAATACATTGAGCATCGGAAATGTTTCCACGGGGACTACGGCAGCTGCGACAGTATCAGGTACCTCCCCTGCTCAGTTATTGAATCTTACGCTACCCCGTGGGGATACTGGCGCGACAGGACCAAAAGGTGATACAGGTGCACAAGGGCCTGCAGGTACAAATTCCGTTGTGGAATCACTGAGCGGAACCGTGGTTACAGCAGGTGCACCGGTGGCACTAACATTTACTAAGACCTACTCTGCACCGCCGGTTGTCATTCCAATTCCGCAATGGAATGGAACACAGATGATTACAGGTGGTGCGGGTAATATCACACGGACAGGATGTAGTTTTACAGCGATGCAGTCACGCGGTACGTTACTGCTGGCCAGTGGACCATTTGAGAACGCAGCAGCGGGAGTTACTTTCCGTGTGTTGGTTATTGGTAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
98831795885fa214c79457c19453ec9d2a0acdba6f4dee9ab2b8863d3544bb23
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6485
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea phage vB_PagM_AAM22 Truncaite,L., Simoliuniene,M., Zajanckauskaite,A., Meskys,R. and Simoliunas,E. 2011-08-10 — GenBank