Protein

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Genbank accession
YP_009056221.1 [GenBank]
Protein name
tail appendage
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARQQANLEYNQFHSGLITEGNLLNLPIDSFREGENFILSKSNAWERRKGLGLEESGTTYPAYVDFSDQTLVSSVHIWQTHYSSIPEILVVQFGDKLHFFDTSVDPLSNGKLFINNQEFLTTEGTTEDIISGASVEGIFVFATEDADPVSLQITDITADASTAKTKITVDRKILYLETRDVWGRAEPSKERPKTLTSDYQYDLLNQGWDAEKISATFAAIGAYPSGYDIWWLYKTTAGTDPNIIGKFTPSRMKDNTSTGIGQERQNTPAPRGSTVASLQVLASGKPSCIQTFAGRVFYAGFQATPRLINDVRPDFRNHVFFSQLVKSNAEISKCYQFADPTSEVDSAIVDTDGGFIKINAARKIVAMEEVSSGLFVIAENGVWLLSGTSDGLFSATGYHVDKITDYGCISPRSVVAYGDTVFYWAEEGIIVLSPDQTTGKHSAQNLTELKIQSLYNDLSTSSKLRSVGTVERTDKYVRWLVSENANPNNFDLEIIFSLRYGAFFINRFKSDITVAERVTGYIPERNVIGNKVVSDYFIVAGVDRVKVESADVTVPLGRRLGDAEFKDTKYLTIKSDDDSFGFYSFNQDNFKDFGLVDAEAYLLSAPQKLDDTQRRKQIASLATHMLRTDVWYKDLDGEVTRENESSMLLRIRWDYADSASSNKWTDISRHSQCYRYRRPMNLKQGVNVYPYEVITARERIRGSGTAFQFEFRTEPEKDCKLLGWAVVATGGTKV
Physico‐chemical
properties
protein length:734 AA
molecular weight: 82259,02980 Da
isoelectric point:5,22853
aromaticity:0,11172
hydropathy:-0,34986

Domains

Domains [InterPro]
DC_0191
STR
311–624
DC_0191
YP_009056221.1
1 734
Architecture
STR
STR 311-624 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009056221.1
1 734
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,8726
Central domain 149 359 212 0,3445
C-terminal 360 734 374 0,2021
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-359
C-terminal
360-734

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage ICP2_2013_A_Haiti
[NCBI] 		1529058 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009056221.1 [NCBI]
Genbank nucleotide accession
NC_024791 [NCBI]
CDS location
range 8661 -> 10865
strand -
CDS
ATGGCAAGACAACAGGCTAATTTAGAGTACAATCAATTCCACTCTGGTTTAATCACAGAGGGGAATCTCTTAAATCTGCCTATTGATTCGTTTCGAGAGGGTGAAAACTTCATCCTCTCTAAATCTAACGCTTGGGAAAGACGTAAGGGTTTAGGTCTAGAAGAGTCTGGAACTACTTACCCTGCTTACGTAGATTTCTCAGACCAGACGTTAGTATCGAGTGTTCACATTTGGCAGACACACTACAGTTCGATTCCAGAGATTCTTGTTGTTCAGTTTGGTGATAAACTACACTTCTTTGATACTTCCGTTGACCCGTTATCTAACGGTAAACTGTTTATCAATAACCAAGAGTTTCTAACTACCGAAGGTACAACAGAAGATATTATTAGTGGAGCCTCAGTTGAGGGTATTTTTGTTTTTGCCACAGAAGATGCCGACCCAGTATCGTTGCAAATCACAGATATTACCGCAGACGCATCTACAGCAAAAACTAAGATTACCGTTGACCGTAAGATTCTTTACCTAGAAACCCGTGATGTGTGGGGACGTGCAGAACCTAGTAAGGAACGGCCAAAGACACTTACATCCGACTACCAGTATGACCTACTTAACCAAGGTTGGGACGCTGAGAAGATTAGTGCCACTTTCGCTGCAATCGGTGCTTATCCTAGTGGTTACGATATTTGGTGGTTATATAAGACCACTGCTGGAACAGACCCAAACATTATTGGTAAGTTCACTCCTAGCAGAATGAAAGACAATACCTCGACTGGTATCGGCCAAGAACGACAAAACACTCCAGCGCCTCGTGGTTCGACTGTAGCGAGTTTACAAGTTCTAGCTAGTGGTAAGCCATCCTGTATTCAAACTTTCGCAGGACGAGTGTTCTACGCAGGATTTCAGGCTACTCCACGATTGATTAACGATGTTCGACCAGACTTCCGCAATCACGTATTCTTCTCACAGTTAGTTAAGTCTAACGCAGAGATTAGCAAGTGTTATCAATTTGCTGACCCTACAAGCGAGGTAGATAGCGCGATTGTTGATACAGATGGTGGATTCATTAAGATTAACGCAGCACGTAAAATCGTAGCAATGGAAGAGGTTTCCAGTGGTTTGTTTGTAATTGCTGAGAACGGTGTTTGGTTGTTGAGTGGTACGTCAGATGGTTTGTTCTCTGCTACTGGGTATCACGTAGACAAGATTACTGACTATGGTTGTATCTCTCCACGTTCTGTAGTGGCATATGGCGATACCGTGTTCTATTGGGCAGAAGAGGGAATCATTGTCCTATCTCCAGACCAAACTACAGGGAAACACTCTGCACAGAATCTAACAGAACTAAAGATTCAATCTTTATATAATGACTTATCTACTTCTAGTAAGTTACGTTCTGTAGGTACAGTAGAGCGTACTGATAAATACGTTCGTTGGCTAGTTAGTGAAAATGCCAATCCAAATAACTTTGACCTAGAGATTATCTTTAGCTTGCGTTATGGTGCATTCTTCATTAACCGCTTTAAGAGTGATATTACCGTAGCTGAACGAGTTACCGGATACATTCCAGAGCGTAACGTGATTGGTAACAAAGTAGTGAGTGATTACTTCATTGTGGCAGGTGTAGACAGGGTTAAGGTAGAGTCTGCCGATGTTACCGTCCCATTAGGTCGAAGACTTGGTGATGCAGAGTTCAAGGACACCAAATACTTAACTATTAAGAGTGATGATGACTCATTTGGATTCTATTCATTTAACCAAGATAACTTCAAAGACTTCGGGTTAGTTGATGCAGAGGCTTACTTGTTAAGTGCTCCACAAAAGCTAGACGACACTCAAAGACGTAAACAGATTGCCAGCCTAGCAACTCACATGTTGCGTACTGATGTTTGGTACAAAGATTTGGATGGAGAAGTAACACGAGAAAACGAATCTAGTATGTTGCTACGTATTCGTTGGGACTATGCGGATTCTGCTTCGTCTAACAAATGGACAGATATTTCTCGCCATAGTCAGTGCTACAGATACCGTAGACCGATGAACCTCAAACAAGGTGTGAATGTGTATCCTTATGAGGTAATCACTGCTAGAGAGCGTATCAGAGGCTCAGGCACAGCATTCCAATTTGAGTTCAGAACAGAGCCAGAAAAGGATTGTAAGTTATTAGGTTGGGCAGTAGTTGCCACTGGAGGAACAAAGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
96224b3b146940dca284774df17b52d1177d748a6bc38ff9c039cc9f194ca5cc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6336
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50