Protein

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Genbank accession
NP_835666.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPYYFEFKVRELDLEPVSVTLSPAPSWVSVYKYNTQPFDQFYGTYDITVFLVANPPPGTPDGTYSIGLTLSDALGGITTHSVNFIINTSGTITFDPVSVPGLWGWWQPGNWLTQSSDTFNDVAIWYDASPGAHHLTLDRRITILPWNSTDAGSAYVGSYIKTLSDNSLLFSWSHVNHQFANMNYSSGADNYKPENVLITKDTSFYSNQYSIFFVYRNHLDWFSHRITGMRLTINHYEYWATNIWDFDVERGNNHLAMPVYSPVVINRAAPYTTVSYGSYWNDDYNHGFVGGWFIAFCLPPYAANPSARDAYYYDDGGGLTTMSVFNYAPGYYQNNVPHQPYITIFKVNKYASQTDGSLGIHPIKLFYYTNEEYASMSLIERNNRFSRFVFTKDQWNAVGYIVEENPLISNSVVIGYSYTYSIYFNETTSVTKSLEVTFYDINGNFRPPTTYAYIDGSDNQQAYIDVYGGFGIGTRFATAQSQYYANTGTIGWRTYNFTPGVFSLSFKECLFYTRALWNEAPQIMDYLMKKHGIPFVS
Physico‐chemical
properties
protein length:537 AA
molecular weight: 61326,40380 Da
isoelectric point:5,22768
aromaticity:0,18436
hydropathy:-0,27430

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_835666.1
1 537
Domain Start End Length (AA) Confidence
N-terminal 1 104 104 0,8609
Central domain 105 404 301 0,9316
C-terminal 405 537 132 0,3769
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-104
Central
105-404
C-terminal
405-537

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodothermus phage RM378
[NCBI] 		148943 No lineage information
Host Rhodothermus marinus
[NCBI] 		29549 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Rhodothermota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_835666.1 [NCBI]
Genbank nucleotide accession
NC_004735 [NCBI]
CDS location
range 67567 -> 69180
strand +
CDS
ATGCCTTATTATTTCGAGTTTAAAGTTAGAGAACTGGATCTTGAACCGGTAAGTGTAACGCTCTCTCCGGCTCCAAGTTGGGTTTCGGTTTATAAATACAACACCCAGCCTTTTGACCAATTTTACGGAACTTATGACATTACAGTGTTTCTGGTAGCAAACCCACCCCCGGGAACACCGGATGGTACCTATTCGATAGGGCTTACTTTGAGCGACGCGCTGGGCGGAATAACCACACATTCAGTCAATTTCATAATCAACACTTCTGGAACCATTACATTTGATCCTGTTTCGGTGCCGGGGCTCTGGGGTTGGTGGCAACCCGGAAACTGGCTTACTCAGAGCAGTGATACTTTCAATGATGTGGCTATATGGTATGACGCTTCTCCGGGGGCACATCATCTTACACTTGATAGGAGAATTACTATTTTACCATGGAATAGTACAGATGCTGGAAGTGCTTATGTCGGATCTTACATAAAAACACTTTCGGATAATTCACTTCTGTTTTCATGGAGCCATGTCAATCACCAATTTGCCAATATGAATTATTCGTCGGGGGCTGATAACTACAAACCCGAAAATGTTTTGATTACAAAAGATACTTCTTTTTACTCCAATCAGTACTCTATTTTCTTTGTTTATAGAAATCATCTCGACTGGTTTTCTCATCGTATAACCGGAATGAGATTAACTATAAATCACTATGAATACTGGGCAACCAATATATGGGACTTTGATGTTGAACGGGGTAATAATCATCTTGCAATGCCGGTCTATTCCCCGGTGGTGATTAACAGAGCGGCGCCTTATACAACCGTCTCTTATGGATCATACTGGAATGACGATTATAATCACGGGTTTGTCGGCGGCTGGTTTATTGCGTTCTGTCTTCCTCCCTATGCCGCTAATCCGTCAGCCAGAGACGCTTATTACTATGATGACGGGGGCGGACTTACCACCATGAGCGTATTCAACTATGCCCCCGGCTATTACCAGAATAATGTTCCGCATCAACCTTATATTACCATATTCAAAGTTAATAAATATGCTTCTCAAACAGATGGGTCTCTCGGTATTCACCCTATTAAATTGTTTTATTACACCAATGAAGAATATGCGTCTATGTCGCTAATTGAAAGAAACAACAGGTTCAGCAGATTTGTCTTTACTAAAGATCAGTGGAATGCTGTTGGATATATTGTTGAGGAAAATCCCCTTATTTCCAACAGCGTTGTTATCGGTTATTCCTACACTTACAGCATTTATTTCAACGAAACAACTTCCGTTACAAAATCTCTGGAAGTAACATTTTATGACATAAATGGCAATTTCAGACCCCCGACAACTTATGCTTATATTGACGGTTCAGACAACCAGCAGGCATATATAGACGTATATGGTGGGTTTGGCATAGGAACACGTTTTGCGACAGCTCAGAGTCAATATTATGCCAACACCGGTACTATAGGATGGAGAACTTATAACTTTACACCCGGGGTGTTTTCTCTCTCTTTCAAGGAATGTCTGTTTTATACCCGCGCATTATGGAACGAAGCGCCCCAGATCATGGATTATCTTATGAAAAAACACGGTATCCCGTTTGTAAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
da812ca64f806489fe9af9dad4d797318923c6a6e0ee24094476e13cd37bed07
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5106
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage rm 378 of a thermophilic host organism Hjorleifsdottir,S., Hreggvidsson,G.O., Fridjonsson,O.H., Aevarsson,A. and Kristjansson,J.K. 2013-12-07 — GenBank