Protein

View in Explore
Genbank accession
QVW27328.1 [GenBank]
Protein name
tail sheath protein
RBP type
TSP
Evidence DepoScope
Probability 0,98
Protein sequence
MALQSPGIETKETSVQSTVVRNSTGRAAIVGKFSWGPAYQIRQISNEVELVNYFGSPDNLTADYFMSAVNFLQYGNDLRVVRVVDKDAAKNASAIFNQIKTTIASQGSNYTVNDTIKVKYNSVVVEEKGKVSKVDSNGKILSVIIPSEKIVAHAKQIGTYPDISTGWTTEIVSQSSGVSALITIDGIESNSGITLLNLDIAKETIQGTAFQTLTQKYQLPSVVALYPGELGSTVQVEIISKAAYDSGAMISGYPSGVSVKNSGRSVMTYGPQTDNQYAFVVRRGGIVQESFIVSTEKTDKDIYGVNIFMDDFFANGGSQYVYGTSLNWPKGFSGILEFGGGLSSNDTVGADELMNGWDMFADREALHVPLLIAGACAGETVEIMSTVQKHVISIGDERQDCTVFVSPPRSLLVNIPLATAVDNMIEWRTGYKLSGGAAVDNNLNVSSSYGFLDGNYKYQYDKYNDVNRWVPLAGDIAGLCVYTDSVSQPWMSPAGYNRGQIRNCIKLAIEPRTAHRDAMYQVQINPVTGFAGGSGFVLFGDKTLTNVPSPFDRINVRRLFNMIKKDIGDNAKYKLFENNDDFTRSSFRMDTGQYMTNIRALGGCYDYRVICDTTNNTPDVIDRNEFVATIYVKPPRSINYITLNFVATSTGADFDELVGPQAV
Physico‐chemical
properties
protein length:663 AA
molecular weight: 72388,63020 Da
isoelectric point:5,13850
aromaticity:0,09804
hydropathy:-0,15732

Domains

Domains [InterPro]
IPR054564
TAS
24–83
IPR054564 IPR054565 DC_1554 IPR035089 IPR020287
IPR054564
TAS
24–85
IPR054564 IPR054565 IPR035326 IPR052042
QVW27328.1
1 663
Architecture
TAS
STR
TAS
TAS
TAS
TAS 24-187 | STR 188-330 | TAS 331-342 | TAS 347-544 | TAS 548-648 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVW27328.1
1 663
Domain Start End Length (AA) Confidence
N-terminal 1 96 96 0,9904
Central domain 97 295 200 0,4764
C-terminal 296 663 367 0,2649
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-96
Central
97-295
C-terminal
296-663

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage JC03
[NCBI] 		2831170 Uroviricota > Caudoviricetes > Pantevenvirales > Pseudotevenvirus > Pseudotevenvirus gap161
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVW27328.1 [NCBI]
Genbank nucleotide accession
MW767161 [NCBI]
CDS location
range 73676 -> 75667
strand -
CDS
ATGGCTTTACAATCTCCAGGTATTGAAACCAAAGAAACATCGGTACAATCTACCGTTGTTCGAAATTCAACTGGTCGCGCTGCCATTGTCGGTAAATTTTCATGGGGGCCAGCTTATCAGATCCGTCAGATTTCTAACGAAGTCGAACTGGTAAACTATTTTGGTTCCCCAGACAACTTGACCGCTGACTATTTCATGAGTGCTGTTAACTTCTTGCAGTACGGTAATGATCTCCGTGTGGTTCGCGTTGTCGATAAAGATGCCGCTAAAAACGCAAGCGCAATTTTTAACCAGATCAAAACAACTATCGCATCACAGGGTTCTAACTACACTGTGAACGATACTATTAAAGTAAAATACAACAGCGTTGTTGTAGAAGAAAAAGGTAAAGTGTCCAAAGTTGACAGTAACGGCAAGATCCTCTCGGTAATCATTCCAAGCGAAAAAATCGTTGCCCATGCTAAACAGATTGGTACTTACCCAGATATTTCTACTGGCTGGACTACCGAAATTGTTTCTCAGTCTTCCGGTGTTTCTGCGTTGATTACGATTGACGGCATCGAAAGCAATTCTGGGATCACTCTGTTGAACCTGGATATTGCAAAAGAAACAATTCAGGGAACCGCTTTCCAGACTCTTACCCAGAAATATCAGTTGCCGTCTGTTGTGGCTCTGTATCCTGGTGAACTGGGTTCAACTGTTCAGGTGGAGATTATCTCCAAAGCTGCTTACGATTCTGGCGCTATGATTTCCGGCTACCCTTCTGGGGTTTCCGTTAAGAACAGCGGTCGTTCTGTAATGACCTACGGGCCACAGACCGATAACCAGTACGCTTTTGTTGTGCGTCGTGGTGGTATTGTACAGGAATCCTTCATCGTGTCAACCGAGAAGACCGATAAAGATATCTATGGTGTCAACATCTTCATGGATGACTTTTTCGCGAACGGTGGCTCTCAGTACGTTTACGGTACTTCCCTGAACTGGCCTAAAGGCTTCTCCGGTATCCTGGAGTTCGGCGGTGGTTTGTCCTCAAACGATACTGTAGGCGCTGATGAACTGATGAATGGTTGGGATATGTTCGCTGATCGCGAAGCTCTGCATGTGCCTCTGTTGATTGCTGGTGCGTGTGCTGGCGAAACCGTAGAGATTATGTCTACCGTTCAGAAACATGTTATTTCAATCGGTGATGAACGTCAGGATTGTACCGTGTTTGTGTCGCCTCCGCGCTCACTTCTGGTGAATATCCCGCTGGCAACTGCGGTTGATAACATGATTGAATGGCGTACTGGCTATAAACTCAGTGGTGGTGCTGCTGTTGATAACAATCTGAACGTAAGTTCAAGCTATGGCTTCCTGGATGGTAACTATAAATATCAGTATGATAAATACAATGACGTGAACCGTTGGGTTCCGCTGGCAGGTGATATCGCTGGCCTGTGTGTTTACACTGATAGCGTTTCTCAACCGTGGATGTCTCCAGCAGGTTACAACCGTGGTCAGATCCGCAACTGTATCAAACTGGCTATCGAACCGCGCACAGCACATCGTGACGCAATGTATCAGGTTCAGATTAACCCGGTAACTGGTTTCGCGGGTGGTTCCGGCTTCGTTCTGTTCGGTGATAAAACACTGACTAACGTACCGAGTCCATTTGACCGTATCAACGTTCGTCGCTTGTTCAACATGATCAAGAAAGACATCGGTGATAACGCGAAATACAAACTGTTTGAAAACAACGACGATTTCACCCGTTCTTCGTTCCGTATGGATACAGGTCAGTACATGACTAATATTCGTGCGCTGGGTGGTTGCTACGATTACCGTGTAATCTGTGACACCACGAACAACACGCCGGACGTAATCGACCGTAACGAGTTTGTAGCAACGATCTACGTGAAACCGCCTCGTTCTATCAACTACATCACTCTGAACTTCGTAGCAACGTCTACGGGCGCAGATTTCGATGAACTGGTAGGGCCGCAAGCCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
413b8a59db3984605de4f629423f58552bcd4eb15abd2234cd96c1fb8bcb37a5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7923
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome analysis of a novel phage JC03 infecting Cronobacter sakazakii Jiang,J., Zhao,C., Li,Z. and Xu,C. 2024-11-20 — GenBank