Protein

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Genbank accession
YP_011852608.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MISNNAPAKMVLNSIMTGYTMAYIQHSIYTDYDVIGRSFWLKLGEEVDRRDFTGIDTFFVMINNLTPSTTYQVQGAFYDSIIDSELLNAKIGINLSNETNFKTKEKPIIVAARSESEPVDVGVGAPIVVVETTGEASYCTIELKSTATEDSPWTKYYIGALGSTIKFGGVPIGDYKIRISGQVTMPDGVTVDSSGYYEFPNILTVAYNFVPPTAPIDIVFKAARIADGKERYDVRIEWDWERGAGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEYTFKVSSIAWGPNKQDITESAPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDEEGKTPISFDPINRVVNVDGKVITRDINAANFIMTNLSDKDNPAIYTQGKSWGDNNSGIWMGMDNTSAKAKLDIGNATQWIRYDGTTLRISSGVVIGTPNGDVDIGTGLQGKQTVFVYKLATSLPAKPLEQDYPPPGWSKTPPNRTDMTQNIYATTGTLDPVTNKLLEGTSWSDVVQWSGTEGTIGHDGQRGPGMYSMGIPGLGGWDDGQANAFFQNNFGKPPVKYDVLTQFNSNAPQTAFTRQWNGAGWINPAMVLHGNMIVNGTVTADKIVAGNAFLSQIGVNIIYDRNAALSGNPEAYYKMKIDLNSGYIHIR
Physico‐chemical
properties
protein length:685 AA
molecular weight: 75011,52500 Da
isoelectric point:4,89568
aromaticity:0,10511
hydropathy:-0,23255

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
103–197
IPR057551
YP_011852608.1
1 685
Architecture
STR
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-335 | STR 350-664 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011852608.1
1 685
Domain Start End Length (AA) Confidence
N-terminal 1 407 407 0,8795
Central domain 408 616 210 0,1858
C-terminal 617 685 68 0,4888
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-407
Central
408-616
C-terminal
617-685

Taxonomy

  Name Taxonomy ID Lineage
Phage Phage vB_SabS_Sds2
[NCBI] 		2797309 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus Sds2
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011852608.1 [NCBI]
Genbank nucleotide accession
NC_103563.1 [NCBI]
CDS location
range 41788 -> 43845
strand -
CDS
ATGATTTCGAATAATGCACCAGCCAAGATGGTCTTAAATAGTATTATGACTGGATATACTATGGCGTATATCCAGCATTCTATCTATACCGACTACGATGTTATCGGTAGATCATTCTGGCTTAAACTTGGCGAAGAAGTGGATAGAAGAGATTTCACTGGAATCGACACTTTCTTTGTTATGATCAATAACTTAACTCCCTCAACTACCTACCAGGTTCAGGGAGCTTTTTATGACTCAATTATTGACTCAGAACTTTTAAATGCAAAAATTGGTATTAACCTCTCTAATGAAACTAACTTTAAAACAAAAGAGAAGCCAATAATTGTTGCAGCAAGATCTGAGTCAGAACCTGTGGATGTTGGGGTGGGCGCACCAATAGTTGTTGTGGAAACAACTGGTGAAGCAAGCTACTGTACTATTGAGTTAAAAAGTACAGCCACTGAAGACAGTCCATGGACTAAATATTATATTGGGGCTTTAGGTTCTACTATTAAATTTGGTGGAGTTCCTATCGGAGATTATAAGATCAGAATATCTGGTCAAGTAACTATGCCTGATGGTGTTACAGTTGATTCTTCTGGATACTATGAGTTCCCTAATATTCTAACTGTAGCCTATAACTTTGTTCCTCCTACTGCACCTATCGATATTGTTTTTAAAGCTGCACGAATTGCTGATGGTAAAGAACGATATGATGTTAGAATTGAGTGGGACTGGGAACGTGGTGCTGGTGCTAACGTTCGTGAGTTCTTGGTTACTTATATAAACTCCGAGGAATACGCTAAAACCGGATGGGCTAAAGCTCAAAAGATAAACGTGGGTGCTGCTAGAGCTGCTACGATTATATCATTCCCATGGAAAGTTGAGTATACTTTTAAGGTATCATCAATTGCCTGGGGACCAAATAAGCAAGATATAACAGAATCAGCTCCTGTAACATTTATATTGAATGAAGATACTCCTCTAGACAACAGCTTTGTCAATGAGACGGGTATTGATGTTAACTACGCCTTTATTAAGGGCAGCATGAAAGATGGGGAAATCTGGAGACAGACATTCTTAATTGATGCAGCTACTGGTGCTATTAACATTGGTCTGCTCGATGAAGAAGGAAAAACACCTATTTCTTTCGACCCTATAAACCGTGTTGTTAACGTTGATGGTAAAGTAATTACTAGAGATATTAATGCTGCGAACTTTATCATGACTAACTTATCAGATAAAGATAACCCAGCAATTTATACTCAAGGTAAATCTTGGGGAGATAATAACTCTGGTATTTGGATGGGTATGGATAATACCTCTGCCAAAGCTAAACTAGACATTGGTAATGCTACACAATGGATACGTTATGATGGTACTACTCTGCGTATTTCTAGTGGTGTAGTAATTGGAACACCAAATGGTGACGTAGATATTGGAACTGGTTTACAGGGTAAGCAAACAGTATTTGTTTATAAGTTAGCAACATCTTTACCGGCCAAACCGCTAGAACAAGATTATCCACCTCCTGGTTGGTCAAAAACTCCACCTAACCGTACAGATATGACACAAAATATCTATGCGACTACAGGTACACTTGATCCAGTTACTAACAAACTTCTTGAAGGTACTAGCTGGTCTGATGTAGTTCAGTGGAGTGGTACTGAAGGTACTATAGGACATGATGGACAGCGTGGTCCTGGGATGTACTCCATGGGTATTCCTGGATTAGGTGGTTGGGATGATGGACAGGCTAACGCATTCTTCCAAAATAACTTTGGAAAACCCCCGGTTAAGTATGATGTTCTAACACAATTTAACAGTAATGCTCCACAAACAGCATTTACCCGCCAATGGAACGGGGCTGGATGGATTAACCCTGCAATGGTTCTTCATGGAAACATGATTGTCAATGGAACTGTAACTGCTGATAAGATTGTGGCAGGAAATGCCTTCTTATCACAAATCGGGGTTAATATAATCTACGATAGAAATGCTGCGTTATCAGGGAACCCTGAAGCATACTACAAGATGAAGATAGACCTAAATAGTGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1942f07642ff164dba7092a5192647229cc09964e876c02c8e01ac3b107b28d3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7897
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome analysis of a novel phage vB_SabS_Sds2 Song,P., Ren,H., Liu,W., Zhang,C. and Zou,L. 2019-02-14 — GenBank