Protein

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Genbank accession
YP_009098726.1 [GenBank]
Protein name
phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,52
Protein sequence
MIEPEVKLLMLKGDKGDGLSDDDMQKVKSLIDSNVDEAKGSLSKALSAQLEVARIDDMNQTKSFVTSSVVDAKEDINRTVNARIAGARFIPKVFANANDLKKAYPKGQDGIFVVADTGHMWLFVNGAWKDCGVYQTPVQKNQTFTFQPSKDGFPNYDTSTHVIDFRCITDSAQITLPSGDAYRIPYMAKVEVNWEFTTGVIIFDINTLSLISQSPYVPINANQYVLASYRRYPAEGDRLTWNGVLAQSLLINGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDQAYVSYQNRNYTLPHNATVALDFSRGVTSFDILIDMKTGEVSTXDKYRLLTPNMDKVSFATVRLLNNGKVAIEGIKLLDEVSPKNSTGILPIAHRGLNSIAPEESLEAYSLAVRSGYKDIECDIYFTEDGIPVLHHDATINSIARNSXGTELTQPVKIGERMLVELNAYDYGIYKSEIFKGLNICTFEDIIKFARRTGARVHAELKQHYTDEQCQVLLDIVSKYRMANKVGWQAFDHSSLDYISSHDENAQLELLAGIITDDLIADGKKRLNGKRKVVLSVGQGVTQRLVDQAHSEGFDVYVWTVDDIDGAKKLINMGVDGIMTNGYIDLPNLLSNEYDLPVSNSPAVDLITNLTWYKNTYIVVQSYIYNLLDGMRDGEERTFAPAPGETWFTSFINLKKKTYTLSFDAKSTVNNDNLTTLMRHVEMGDNNFNCVTEVNGTPVAPSSWGDNAFKLSDSYTRYSVRYTANPDDKPFQIGFRTSSSTGTVSIKNIRLTAGTDEKWGATICMLAYLDVNQGETYYARQLEDGAWLNAPMVVTDDNLDPVPATIITDDKNHTFKITIPSGGTKLFLNSNETLVPTVFKQSASSGI
Physico‐chemical
properties
protein length:878 AA
molecular weight: 97629,96120 Da
isoelectric point:5,14549
aromaticity:0,09475
hydropathy:-0,29475

Domains

Domains [InterPro]
DC_1932
STR
17–548
DC_1932 DC_1520 G3DSA:2.60.120.260 DC_1292
IPR017946
STR
368–621
IPR017946 IPR008979
PTHR46211
Unmapped
371–614
PTHR46211
IPR030395
ENZ
376–621
IPR030395
IPR017946
STR
377–612
IPR017946
cd08556
ENZ
379–612
cd08556
IPR030395
ENZ
381–612
IPR030395
PS50007
ENZ
385–429
PS50007
YP_009098726.1
1 878
Architecture
STR
STR
RBD
STR 17-668 | STR 670-811 | RBD 812-878
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009098726.1
1 878
Domain Start End Length (AA) Confidence
N-terminal 1 371 371 0,9413
Central domain 372 772 402 0,8438
C-terminal 773 878 105 0,0922
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-371
Central
372-772
C-terminal
773-878

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Ld3
[NCBI] 		1500735 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus delbrueckii
[NCBI] 		1584 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009098726.1 [NCBI]
Genbank nucleotide accession
NC_025421 [NCBI]
CDS location
range 12062 -> 14698
strand +
CDS
ATGATCGAACCAGAAGTTAAGCTTTTGATGTTGAAGGGCGACAAAGGCGATGGCCTTTCAGACGATGACATGCAAAAGGTAAAGTCGTTAATTGACTCCAATGTTGACGAGGCAAAAGGAAGTCTCAGCAAAGCATTAAGCGCACAGCTTGAAGTTGCGAGAATTGACGACATGAACCAAACCAAGTCGTTTGTCACTTCCAGCGTGGTTGATGCGAAGGAAGACATTAACAGAACAGTAAATGCGAGAATTGCGGGTGCGAGATTTATTCCGAAGGTATTCGCCAATGCTAACGATCTGAAAAAGGCGTACCCTAAAGGACAAGATGGCATTTTCGTTGTAGCAGATACCGGGCACATGTGGTTATTCGTCAACGGTGCTTGGAAAGATTGTGGAGTATATCAAACCCCAGTTCAGAAAAATCAGACGTTTACGTTCCAGCCTTCTAAGGATGGCTTCCCGAATTATGATACGTCAACGCACGTGATCGACTTTAGATGTATTACAGACAGTGCACAGATCACGCTTCCAAGCGGTGATGCTTACAGGATTCCTTATATGGCTAAGGTGGAGGTCAACTGGGAATTTACCACGGGTGTCATTATCTTTGACATCAACACCTTATCCCTCATTTCACAGTCTCCGTATGTTCCCATCAACGCAAATCAGTACGTCTTGGCTAGTTATAGAAGATACCCAGCTGAAGGAGACCGACTTACTTGGAACGGTGTTTTAGCGCAAAGTCTGCTGATTAATGGGGAGACCTATATGGAGCAGAACGTTCAGTTCGTTCCATCAAAAGACGGCTTACCATACTACGATAGCAAGAGGAAGATCATTAACTTCAATTGCCTTACTGACCAAGCCTACGTCTCTTACCAAAATCGCAATTATACGTTGCCACATAATGCTACTGTCGCTCTTGACTTCTCCCGTGGTGTAACTTCCTTCGACATCTTAATTGACATGAAGACGGGGGAGGTCAGCACCMACGACAAGTATCGTTTGTTAACGCCAAATATGGACAAAGTTTCATTTGCGACCGTTAGACTTTTGAATAATGGCAAAGTTGCGATTGAAGGCATTAAATTGCTAGATGAGGTTAGCCCGAAGAATAGCACTGGAATTCTGCCAATCGCACACCGTGGTCTTAATTCAATTGCTCCGGAGGAAAGCTTGGAGGCCTATTCTTTGGCCGTAAGAAGCGGCTACAAAGATATTGAGTGCGACATTTACTTTACGGAAGACGGCATTCCTGTTTTGCACCATGATGCTACTATTAACAGTATTGCCCGCAATTCARAKGGTACAGAGTTGACGCAACCAGTAAAAATTGGCGAACGAATGTTAGTAGAATTAAACGCCTATGACTACGGGATTTATAAGTCTGAGATCTTCAAAGGCCTCAATATTTGCACATTTGAAGACATCATCAAGTTCGCTCGTAGAACCGGGGCAAGAGTTCATGCTGAGCTGAAGCAACATTATACCGATGAACAATGCCAAGTGCTTTTAGACATCGTCTCTAAGTATAGAATGGCGAACAAGGTAGGGTGGCAAGCATTTGATCATTCCAGTTTGGATTATATTTCTAGTCATGACGAAAATGCTCAGTTGGAGTTGCTAGCTGGGATCATTACCGATGATTTAATTGCGGACGGCAAAAAGAGGCTTAATGGCAAGAGAAAAGTTGTTCTTAGTGTAGGGCAAGGCGTCACTCAACGATTAGTTGACCAAGCTCATTCCGAAGGGTTCGATGTTTACGTTTGGACTGTCGATGACATTGATGGGGCTAAGAAGTTGATAAACATGGGCGTAGACGGGATCATGACCAACGGCTACATTGATTTGCCGAATTTGCTGAGTAACGAATATGACTTGCCAGTTTCTAATTCTCCTGCGGTTGATTTAATAACTAATTTAACTTGGTACAAGAACACGTACATTGTCGTTCAGAGCTACATATACAATCTGCTTGATGGTATGAGAGACGGAGAAGAGCGCACATTTGCCCCCGCACCTGGTGAAACTTGGTTTACCTCTTTTATTAATCTTAAAAAGAAAACATACACTCTCTCCTTTGACGCAAAATCAACGGTAAACAATGACAACCTTACCACTCTCATGAGACATGTCGAGATGGGGGACAACAATTTTAATTGCGTAACTGAGGTTAATGGAACTCCAGTCGCTCCTTCAAGTTGGGGGGACAATGCCTTTAAATTATCGGATAGCTACACTCGCTACTCGGTAAGGTATACTGCTAACCCAGATGACAAGCCGTTCCAAATTGGATTTAGAACAAGCTCCTCAACGGGCACAGTAAGTATCAAAAATATTCGGCTTACGGCAGGAACGGATGAAAAGTGGGGAGCAACGATTTGCATGCTGGCATATTTAGACGTTAATCAAGGTGAGACGTACTATGCAAGACAATTAGAAGACGGGGCATGGCTGAATGCACCAATGGTAGTTACAGACGACAATCTTGATCCTGTCCCAGCAACCATAATTACTGACGACAAAAACCATACGTTTAAGATCACAATTCCAAGTGGAGGCACGAAGCTTTTCTTAAACTCCAATGAAACTCTCGTTCCAACTGTATTCAAGCAATCCGCTTCAAGCGGCATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
da5d84aee63b1cd216b0988562bf9dbfff0ae98faf462973b1f52d1b6f57a206
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7239
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50