Protein

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Genbank accession
AGN12302.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,68
Protein sequence
MADKGFGVKKINLIGASGTPTLTSPNNLNLNAVNVAISTDVSIGGTCTAYEFSGATASWMVGNDGTDNYTFIGSGISTQVNDPELNLYKGQKYIFHNRSSGHPFRIQITPNGSVGGQYNTGVTNNDGSAQTDIIFEVPQDAPDTLYYQCTSHTGMGGKINIVGVASDTDTTLDGKTSGTNVYLGTTAGAANTTSPGNEVGIGYSALMQSTGRDSTGIGAYALQNVNGYYNTAVGSYAGFSTTAGISTASDNSFFGYASGYQNNGDGNSGIGLRTLFRNIGTENTALGMYSLQDNINGSYNVGMGVYAQYANVSGSNNTSAGWAALSSNVSGNFNLVLGSNALRTITSGLSNAAVGSDAGRYLTGGSSYNTLIGNYAVGIGTTGSYVTAVGASALAKNIANFNTATGAYASLQNTTGALNCSFGAYAGENTTTGSWNNAFGYAALNDNITGVSNNVMGYFALGVSTDASYNVAIGYESLKSLKTGDYNTAVGHRTLDLQTSGSYQTALGGFALGMSTTTISNTAIGYGSQLQTIEGNYNTAVGNNSLRENIEGDSNVAVGDNAIGIGTTGSYNVAVGAYALEKIIVTIVLQ
Physico‐chemical
properties
protein length:590 AA
molecular weight: 60301,99170 Da
isoelectric point:4,57079
aromaticity:0,09153
hydropathy:-0,12220

Domains

Domains [InterPro]
DC_0856
STR
5–572
DC_0856
IPR008972
STR
74–160
IPR008972 IPR011049
AGN12302.1
1 590
Architecture
STR
STR 5-586 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN12302.1
1 590
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,4185
Central domain 156 579 425 0,9818
C-terminal 580 590 10 0,6674
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-579
C-terminal
580-590

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12302.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 114378 -> 116150
strand -
CDS
ATGGCAGATAAAGGATTTGGCGTAAAGAAAATTAATTTGATTGGGGCATCTGGTACTCCAACACTTACAAGTCCAAATAATCTAAATTTAAACGCAGTAAACGTTGCTATAAGTACTGATGTATCAATCGGTGGAACTTGTACTGCATATGAATTTAGTGGTGCTACTGCTAGTTGGATGGTTGGTAATGATGGAACAGATAATTACACTTTTATAGGATCAGGTATTTCAACTCAAGTAAATGATCCAGAATTAAATCTTTATAAAGGACAAAAATATATTTTTCATAATAGATCTTCAGGGCATCCATTTAGGATTCAAATCACTCCTAATGGGTCTGTAGGTGGACAATATAATACTGGTGTGACCAATAATGATGGTTCCGCACAAACAGATATTATATTTGAAGTTCCACAAGATGCACCTGATACTCTATATTATCAGTGTACATCGCATACTGGAATGGGTGGTAAGATTAATATAGTAGGTGTAGCTTCTGATACTGATACAACTTTAGATGGAAAGACTAGTGGTACAAATGTTTACTTAGGAACTACTGCTGGTGCAGCAAATACAACAAGTCCTGGTAATGAAGTTGGTATTGGTTACAGTGCATTAATGCAATCTACTGGCCGTGATAGTACTGGTATTGGAGCATACGCTTTACAAAATGTTAATGGATATTATAATACTGCAGTTGGATCTTACGCTGGATTTAGTACTACTGCTGGCATTAGCACTGCATCAGATAATAGTTTCTTTGGATATGCTTCTGGGTATCAGAATAATGGAGATGGTAATTCTGGAATTGGTCTTCGTACTCTCTTTAGAAATATTGGAACAGAGAATACTGCATTGGGTATGTATTCTTTACAGGATAATATAAATGGAAGTTATAATGTTGGAATGGGTGTTTATGCACAATACGCTAATGTGAGTGGATCAAACAATACTTCGGCTGGTTGGGCTGCATTATCCTCTAATGTGAGTGGTAATTTTAATTTGGTTTTAGGGTCGAATGCATTAAGAACAATTACCTCTGGACTTTCAAATGCTGCTGTAGGTTCTGATGCAGGAAGGTATTTAACTGGTGGATCTAGTTATAATACATTAATTGGTAATTATGCTGTTGGTATTGGTACTACTGGAAGTTATGTCACTGCCGTTGGAGCAAGTGCATTAGCTAAGAATATAGCAAATTTTAACACAGCAACAGGTGCTTATGCATCGCTACAGAATACAACAGGAGCTTTGAATTGTTCTTTCGGTGCTTATGCAGGAGAAAATACCACGACAGGAAGTTGGAATAATGCGTTTGGATATGCTGCTTTAAATGATAATATAACAGGTGTATCTAATAATGTAATGGGATATTTCGCACTTGGAGTTTCTACTGATGCTAGTTATAATGTTGCAATCGGATATGAGAGTTTAAAATCTCTAAAAACTGGTGATTATAATACTGCTGTAGGACATAGGACACTTGATCTTCAAACTAGTGGAAGTTATCAAACTGCTCTTGGTGGATTTGCATTAGGTATGAGTACTACGACCATATCAAATACTGCTATTGGATATGGTAGTCAACTTCAGACTATAGAAGGTAATTATAATACTGCGGTTGGAAATAATAGTTTACGGGAAAATATTGAGGGTGATAGTAATGTTGCTGTGGGAGATAACGCAATTGGTATTGGAACGACTGGAAGTTATAATGTTGCAGTTGGTGCTTATGCATTAGAAAAAATAATAGTAACTATAGTACTGCAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ba8a842dd47f76e74e7aaea12bd6fe76bbc81e184ae3722276aa5ef429532989
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8413
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank