Protein

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Genbank accession
XDJ00163.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSGFDPFYTYPDKTVGNYLSQVPGSDNTGMNNSLDSFNAAILKLALKGGGVLHPEPGIYKISGGSVLLPSYVTLDLRGCELRGDGKGTNTLIASGWVENGTLIDITPEYGTGGGDGNGTHFVIQARVFGGKLTNAGIGIRGQRFNYGTTIEGVWFENSLSQGWFTTHSWGLKVTRCLARATCKMLDFVDWTEVSNNDFEGLAYFVSGYVGLIIGTGGYGGSYSCRIISNGFHQMETAIKLEGEIDDLVIESNHYERTVYHVVGDQYTKTNFRIKHNWMKANLAHPDDPSLEPPTKPGVIPMVFQNLKDSDIGPNRFTNDSGSTYSAHIVATGDECYGNRYYVGYKTDVDNDFSKIQMSNANALYVMRGSNNSTISQPSIELRSGSAAYTVEKYKASYNMQLNKIPLCDVYLDGSGNATVTTWFQQSDQLLGAFSFRFVGSSATAVVAGTFCYDTANVTINKISSGGSLPIAIGAAGDGRLTISFAQVPVGASITGWVKQL
Physico‐chemical
properties
protein length:500 AA
molecular weight: 53999,80750 Da
isoelectric point:5,62464
aromaticity:0,11000
hydropathy:-0,18680

Domains

Domains [InterPro]
IPR012334
STR
24–286
IPR012334 DC_1774
IPR012334
STR
25–286
IPR012334
IPR011050
STR
26–326
IPR011050
XDJ00163.1
1 500
Architecture
STR
RBD
STR 24-326 | RBD 340-500
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDJ00163.1
1 500
Domain Start End Length (AA) Confidence
N-terminal 1 31 31 0,8710
Central domain 32 364 334 0,9880
C-terminal 365 500 135 0,9482
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-31
Central
32-364
C-terminal
365-500

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PMBT18
[NCBI] 		3229742 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDJ00163.1 [NCBI]
Genbank nucleotide accession
PP926505.1 [NCBI]
CDS location
range 48852 -> 50354
strand +
CDS
ATGAGTGGGTTTGACCCATTCTATACGTACCCTGATAAAACAGTTGGGAATTATTTGTCACAAGTGCCAGGGTCAGATAATACAGGCATGAATAATTCTTTGGATTCGTTTAATGCAGCCATCTTGAAACTCGCTCTTAAAGGTGGGGGTGTCCTTCACCCAGAGCCGGGAATTTACAAAATATCCGGCGGGTCGGTTTTACTCCCATCATATGTTACTTTGGATCTTCGTGGGTGTGAACTTCGTGGCGATGGGAAAGGGACAAACACACTCATAGCTTCTGGGTGGGTCGAAAATGGGACTCTGATAGATATTACGCCAGAATATGGAACCGGCGGCGGTGATGGCAATGGAACTCACTTCGTTATACAAGCCCGCGTGTTTGGTGGCAAGCTGACCAATGCCGGGATAGGCATCCGAGGCCAACGTTTTAACTACGGCACCACCATAGAGGGTGTATGGTTCGAAAATTCGCTTTCTCAGGGTTGGTTTACAACTCATTCATGGGGGTTAAAAGTAACACGTTGTTTGGCTCGCGCGACTTGTAAGATGCTGGACTTTGTTGATTGGACCGAGGTTTCAAACAATGATTTTGAAGGTCTTGCATATTTCGTTTCTGGTTACGTGGGCCTGATCATTGGAACTGGTGGATACGGGGGTAGTTACAGTTGCCGTATTATATCCAATGGGTTCCACCAAATGGAGACAGCCATAAAACTTGAAGGTGAAATAGACGATTTAGTTATTGAAAGTAACCATTATGAACGTACCGTATACCATGTGGTGGGTGATCAATACACGAAGACTAATTTCCGAATCAAACATAACTGGATGAAAGCAAACCTTGCACACCCAGATGACCCGAGTCTGGAACCACCAACCAAACCTGGTGTTATCCCTATGGTTTTCCAGAACCTGAAAGATTCAGACATCGGGCCAAACAGATTTACGAATGATTCCGGCTCTACTTATTCAGCACACATTGTGGCCACTGGTGATGAATGTTACGGTAACCGCTACTATGTTGGTTACAAAACAGATGTTGATAACGATTTTTCAAAAATCCAGATGTCTAATGCAAACGCGTTGTATGTTATGCGTGGTTCTAACAACTCCACGATTTCCCAACCTAGCATTGAATTACGATCTGGTAGTGCGGCATATACTGTAGAGAAGTACAAAGCTAGCTACAACATGCAACTAAACAAGATTCCACTTTGTGATGTTTATCTAGATGGTTCTGGAAACGCGACCGTCACCACTTGGTTCCAACAGAGCGACCAATTACTTGGAGCCTTCAGTTTCAGGTTTGTTGGTAGTTCAGCAACTGCGGTCGTTGCTGGAACATTCTGCTATGATACAGCGAATGTGACTATCAACAAAATATCCTCAGGTGGGTCGTTACCAATCGCTATTGGTGCTGCCGGAGATGGGAGATTAACCATATCTTTTGCACAAGTCCCGGTCGGCGCAAGCATTACAGGTTGGGTTAAACAATTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e16e2140ba251d294d559158653193a6ee8bc79b56fcf5d39cd6c4e68bae4683
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7039
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
This phage originates from the Bacteriophage catalogue of the Bacteriophage Competence Centre, Department of Microbiology und Biotechnology, Max Rubner-Institut, Kiel, Germany Sprotte,S., Brinks,E. and Hille,F. 2020-12-18 — GenBank