Protein

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Genbank accession
YP_005087508.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,76
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MALTQVSSAGIKNAEVKTEDILDANITTAKIAADAITAAKIADDAIGAEHIETLDATVDWNDDVGVRFGASNDLQIRHNNSGKSIIYHSPASAVLSIAADHLNLADYGNEHPFITCDRDGSVDLYYDNSKKLETTANGIQINDYLLALKAGSGSDAHLQLIGDNGAQNNDFFRFTSGAGISAWENYSSGSWVTNLRVKETGEVQIPNDTGKYECGASGDLKIYHDGSNSIIKNTTGTLQITADSSEFVNAANSEYKARYINNGAVELYHDGSLRSYTSANGFQVKKASSDDVEFRLVNTQNTTAGATNTILSEHDARTTAKIVFGRNNDANDFSASAASTQGDIQFYTTASGTLTQHGRFINTGYFHVCNDGNFVDCSDSHAARSTNASWAFRAVNSHASTPYGVHAYFNNSDPDTGNYPFFLGQDQTTTRFRVQSNGNVENHDNSYGSISDIKLKENIVDAGSQWEDIKAIKVRNFNFKASKSKKKLLGVVAQELETTSPGLVVETPDEDLDHNDLGTTTKSVRYSILYMKAIKALQEAMAKIETLETEVAALKAK
Physico‐chemical
properties
protein length:557 AA
molecular weight: 60275,25960 Da
isoelectric point:5,08024
aromaticity:0,08259
hydropathy:-0,45566

Domains

Domains [InterPro]
DC_0421
STR
2–557
DC_0421
IPR030392
CHP
451–504
IPR030392 Coil
IPR030392
CHP
451–551
IPR030392
YP_005087508.1
1 557
Architecture
STR
STR 2-557
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_005087508.1
1 557
Domain Start End Length (AA) Confidence
N-terminal 1 27 27 0,9158
Central domain 28 226 200 0,1213
C-terminal 227 557 330 0,9631
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-27
Central
28-226
C-terminal
227-557

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage NATL1A-7
[NCBI] 		445693 Uroviricota > Caudoviricetes > Autographivirales > Cheungvirus > Cheungvirus NATL1A7
Host Prochlorococcus marinus str. NATL1A
[NCBI] 		167555 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_005087508.1 [NCBI]
Genbank nucleotide accession
NC_016658.1 [NCBI]
CDS location
range 32715 -> 34388
strand -
CDS
ATGGCATTAACACAAGTATCCTCCGCAGGTATCAAGAATGCGGAGGTTAAAACTGAAGACATTCTTGATGCAAATATCACTACAGCTAAAATAGCTGCAGATGCAATTACTGCAGCTAAAATAGCGGATGACGCTATTGGTGCTGAACATATAGAAACATTAGATGCTACTGTAGATTGGAATGATGATGTTGGAGTAAGATTTGGTGCAAGTAATGATTTACAAATAAGACACAATAATAGTGGTAAAAGTATTATTTACCATTCACCTGCCTCGGCAGTATTATCTATCGCAGCAGATCATTTAAACTTAGCTGATTATGGTAATGAACATCCGTTTATAACTTGTGATAGAGACGGGTCAGTAGACTTATATTATGACAACAGTAAGAAGCTTGAGACAACTGCTAATGGAATACAGATTAATGATTATTTACTTGCATTAAAAGCAGGTAGTGGATCTGATGCTCATTTACAATTAATAGGTGATAATGGAGCGCAGAATAATGATTTCTTTAGATTTACTTCTGGTGCTGGTATTTCTGCATGGGAAAATTATAGCAGTGGAAGTTGGGTAACAAATCTTCGTGTCAAAGAAACTGGTGAAGTACAGATACCAAATGATACAGGGAAGTATGAATGCGGTGCTAGTGGAGACTTAAAAATCTATCATGATGGATCCAACAGCATTATTAAAAACACTACTGGCACTTTACAGATAACGGCTGATAGCTCAGAATTTGTAAATGCTGCTAATTCTGAATACAAAGCAAGGTATATAAATAACGGGGCTGTAGAACTCTACCATGATGGTTCACTCAGATCATACACATCAGCCAATGGTTTTCAAGTTAAAAAGGCAAGTTCAGATGATGTAGAATTTAGATTAGTCAATACTCAAAATACTACTGCTGGGGCTACTAATACTATTTTATCTGAACATGATGCTAGAACTACAGCTAAGATAGTATTTGGTCGTAATAATGATGCTAACGACTTTAGTGCATCAGCAGCTTCGACTCAAGGTGATATTCAGTTTTATACAACAGCTAGCGGTACTCTAACACAGCATGGAAGATTTATTAACACTGGTTATTTTCATGTTTGTAATGACGGTAACTTTGTAGATTGTTCTGATTCACATGCAGCTAGAAGCACTAATGCAAGTTGGGCTTTTAGAGCAGTTAATTCTCATGCTTCTACTCCTTACGGAGTCCATGCGTATTTTAATAACTCAGATCCCGATACTGGTAACTATCCTTTCTTTCTAGGTCAAGATCAAACAACAACTAGATTTAGAGTACAATCTAACGGAAATGTTGAAAACCATGACAACAGTTATGGATCGATATCTGATATAAAATTAAAAGAAAATATTGTTGATGCTGGATCGCAATGGGAGGATATAAAAGCAATTAAAGTTCGTAATTTTAATTTTAAAGCAAGTAAATCTAAGAAAAAACTTTTAGGTGTAGTAGCTCAAGAATTAGAAACTACTTCACCTGGATTAGTTGTTGAAACTCCTGATGAAGATTTAGATCATAACGACCTTGGTACTACTACTAAGTCTGTTAGATACTCAATCTTATACATGAAAGCAATTAAAGCCTTGCAAGAAGCTATGGCAAAAATAGAAACATTAGAAACGGAAGTAGCCGCCCTAAAGGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
243fd2c886747b2e4b7c227361ffdca86e37ed20a40288fd346bfd05384ed3ec
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6958
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage NATL1A-7 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank