Protein

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Genbank accession
YP_009819524.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
TF
Evidence RBPdetect2
Probability 0,81
Protein sequence
MSNNKLITSTAPGVAPTTQQLGPHQLGVSTKDSKIYVNNGTEIIDVLGLVFEVPQTVTATRSYVVDGAALSISPETANNSFYMSFKTAAQTEVGRLGKVTTSSSNHDIKLQGIGAVGLHRDYITNDDHQMVLMSDGRTIVSAKPTSDGIFLRPKGYSETDNQWSIDSGGTVRHRHESGTAYDIRDSVDSGVGSSSYMAWTHDDAVRRGWFGYGSASDNHFSWRNEEGAGVPEIVLQEGGRIKLNPGTDNAVDAENSAIYYGRSYCNAAVGGSWGHSSFAALALLNTTSGPAYTVFKMGTDGPKLQALGEGGSTVRLYPGGGNANFTAWLPNSWTHYYTGTSPMSWDMFAETANVNTSIRMREDGNNHGVEFGYAGASNNNEFFLNMRQGGSDNRAFSIYRDRSRAVFNTERLDVESSGAEKMLLYRADGDANVNIRYSSSSGADVWAGKTTNNFAIGSASDLSSAGNQWMIIGSAAATFRVPVVLEGGSPSGSHAIRRDWAEDNLFRRNVQSVTSQDWNTLYNSGFSSVNNGVGLNQPSAPIVGNAYTYGSLLSMSHTNTNSGVKTQLYFPHNASSPDTTPRLPVYRSGYTSDYGNWRTLLTLQYADIRYTQTSSDINLKTDIAEIQDATSIVNALGTYSFLKQNAEVKFLKEEGEYQGQEEEYSFEMGFIAQEVEKVLPHLVGEDQFGYKTIKSKDNTLLAVAYQALKESNKRVDDLETRLKALEKLLGVI
Physico‐chemical
properties
protein length:732 AA
molecular weight: 79628,76110 Da
isoelectric point:5,41701
aromaticity:0,09699
hydropathy:-0,45150

Domains

Domains [InterPro]
DC_1590
STR
2–732
DC_1590
cd19958
STR
509–598
cd19958 IPR030392
IPR030392
CHP
615–683
IPR030392 Coil
Coil
Unmapped
643–663
Coil
YP_009819524.1
1 732
Architecture
STR
STR 2-732
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009819524.1
1 732
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,9589
Central domain 15 213 200 0,1230
C-terminal 214 732 518 0,9455
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-14
Central
15-213
C-terminal
214-732

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VspSw_1
[NCBI] 		2484249 Uroviricota > Caudoviricetes > Demerecviridae > Pogseptimavirus VspSw1 >
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009819524.1 [NCBI]
Genbank nucleotide accession
NC_048151 [NCBI]
CDS location
range 5039 -> 7237
strand +
CDS
ATGTCTAATAATAAACTAATAACATCTACGGCACCTGGAGTAGCTCCCACTACACAGCAACTGGGCCCTCATCAGTTAGGTGTTAGTACCAAAGACTCTAAGATATACGTCAACAACGGTACTGAAATAATTGACGTATTAGGGCTAGTATTTGAGGTACCTCAAACAGTAACAGCTACTAGGAGTTACGTTGTGGATGGGGCAGCACTCTCTATATCTCCAGAAACCGCCAATAACTCTTTCTACATGTCATTTAAGACAGCGGCCCAAACAGAGGTTGGTAGGTTAGGTAAAGTAACAACCAGCTCTAGTAATCACGATATTAAGCTGCAAGGTATTGGTGCTGTTGGGTTACACAGGGATTATATCACTAATGATGACCATCAAATGGTATTGATGTCCGACGGTAGAACCATAGTCTCAGCGAAACCTACTTCGGACGGAATCTTCCTACGACCTAAAGGATATAGCGAAACGGATAATCAGTGGAGTATAGATAGCGGAGGTACTGTAAGGCATCGCCATGAATCAGGTACTGCGTATGACATTAGAGATTCGGTGGACTCGGGTGTAGGTAGCTCTTCTTACATGGCCTGGACCCATGATGATGCCGTCCGCAGAGGTTGGTTTGGTTATGGCTCTGCTAGCGATAATCACTTCTCTTGGAGAAACGAGGAAGGGGCAGGAGTACCTGAGATAGTGCTACAAGAAGGTGGTAGGATAAAACTTAACCCAGGGACAGATAACGCTGTAGATGCGGAAAACTCAGCTATATACTACGGCCGCAGCTACTGTAATGCTGCCGTAGGTGGTTCGTGGGGGCATAGTTCATTCGCCGCTTTAGCGCTATTGAATACAACATCAGGGCCGGCCTATACAGTGTTTAAGATGGGAACCGACGGTCCTAAGCTACAAGCATTAGGTGAAGGGGGTAGTACTGTACGCCTGTATCCTGGCGGTGGTAATGCGAACTTTACTGCATGGTTGCCTAATTCCTGGACGCACTACTATACCGGCACTAGCCCTATGAGTTGGGATATGTTTGCTGAAACAGCTAACGTCAATACCTCTATTCGAATGAGAGAAGACGGTAACAACCATGGTGTTGAGTTCGGGTACGCAGGTGCCTCTAACAATAACGAGTTCTTCTTGAATATGCGACAAGGCGGCTCAGATAACCGTGCATTTAGTATTTACCGAGACCGTAGTCGCGCAGTCTTCAATACAGAACGACTGGATGTTGAATCTAGTGGTGCTGAGAAGATGCTTCTGTACCGTGCGGATGGTGATGCTAACGTAAATATTCGTTACTCTAGTAGCTCTGGTGCTGACGTATGGGCAGGTAAAACTACAAACAACTTCGCTATTGGTAGTGCTTCAGACTTATCTTCTGCAGGCAATCAATGGATGATTATTGGTAGTGCCGCAGCTACTTTCCGTGTACCTGTTGTGTTGGAGGGCGGTTCACCTTCAGGCAGCCATGCTATTCGTCGTGATTGGGCTGAAGATAACTTATTCCGCCGCAATGTGCAGAGTGTTACTTCTCAGGACTGGAATACGTTATACAACTCTGGGTTTTCATCAGTTAATAATGGCGTTGGTTTAAACCAGCCTAGCGCACCTATTGTTGGCAACGCCTACACGTATGGTTCATTGTTGTCTATGTCGCACACTAATACAAACTCTGGTGTTAAAACACAGTTATATTTTCCACATAATGCAAGTAGTCCAGACACGACACCGCGATTACCAGTCTACCGTTCAGGATATACTAGTGATTACGGTAACTGGCGTACTCTGCTGACATTACAGTACGCAGACATTAGATATACACAGACGTCTTCTGATATCAACCTAAAAACTGATATCGCCGAGATTCAGGACGCTACCAGCATAGTTAATGCACTAGGTACTTACTCTTTCCTAAAACAGAATGCTGAAGTTAAGTTCTTGAAAGAGGAAGGAGAATACCAAGGACAAGAAGAAGAGTACTCCTTCGAAATGGGCTTCATAGCTCAGGAAGTGGAGAAAGTACTACCTCACTTAGTGGGAGAAGACCAGTTTGGTTACAAAACCATTAAGTCCAAGGATAATACGCTACTGGCTGTAGCATACCAAGCTCTTAAAGAATCCAACAAGAGAGTAGACGACCTAGAAACTAGGCTCAAAGCCCTAGAAAAACTTTTAGGCGTTATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d1f9ebc0ce42a2cd4cf72abead6a1c4a9190ff170bf4b15dbbf959499b7c31ed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6426
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genomic analysis of VspSw_1 Chen,L. 2024-12-16 — GenBank