Protein

View in Explore
Genbank accession
QDH46742.1 [GenBank]
Protein name
putative baseplate protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MKTMEDLAMSVESNVNFIPELNDQFPRKNDLIKEGDDHIRLVKKVLKNTLPGFNKALTITADSMNNFDKNIGFETDTVILKGAMRVDGSINVNGKKLTGLATPTADGDAVSWKFIKDLTTSIYNVTWPINSIYFTVDDRNPSVILGFGTWEKFGQGRVPIGTGTGVDGRSESKTFVNNGTGGMYSTVLTIDNLPQHTHQLNLDTVAGGDHKHDGGVAIRASSSQPFGKAAAHDELFSYEHHKYGEDVGTAWTNTVPGHTHKVQGNTVGTGGGIGFNTQNPYIGVSMWKRTA
Physico‐chemical
properties
protein length:291 AA
molecular weight: 31587,97110 Da
isoelectric point:6,35565
aromaticity:0,08247
hydropathy:-0,42302

Domains

Domains [InterPro]
DC_0033
STR
6–291
DC_0033
IPR053827
ATT
123–290
IPR053827
QDH46742.1
1 291
Architecture
STR
ATT
STR 6-122 | ATT 123-291
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH46742.1
1 291
Domain Start End Length (AA) Confidence
N-terminal 1 114 114 0,9862
Central domain 115 280 167 0,0025
C-terminal 281 291 10 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-114
Central
115-280
C-terminal
281-291

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage LAh_8
[NCBI] 		2591032 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH46742.1 [NCBI]
Genbank nucleotide accession
MK838114 [NCBI]
CDS location
range 51759 -> 52634
strand +
CDS
TTGAAGACAATGGAGGATCTGGCTATGTCAGTAGAAAGTAATGTAAATTTTATACCAGAGCTGAATGATCAGTTCCCTCGAAAAAATGACTTGATCAAAGAGGGTGATGATCATATCAGGTTAGTTAAAAAAGTTCTGAAGAATACACTCCCAGGTTTTAACAAAGCTTTAACAATAACAGCAGACTCAATGAATAACTTCGATAAGAATATTGGATTTGAAACTGATACTGTTATCCTGAAAGGGGCTATGCGTGTAGACGGTTCTATAAACGTTAACGGTAAAAAGTTAACTGGATTAGCCACTCCAACTGCGGATGGTGATGCGGTTTCATGGAAGTTTATTAAAGATTTAACAACCTCTATTTATAATGTAACATGGCCTATCAATTCAATCTATTTCACTGTAGATGATCGAAACCCCTCCGTGATTCTTGGATTTGGTACTTGGGAGAAGTTTGGACAAGGTAGAGTCCCCATCGGTACTGGAACTGGTGTGGATGGTCGTAGCGAGTCTAAGACATTTGTAAATAATGGTACAGGTGGTATGTACTCAACTGTTCTAACTATTGACAACTTACCTCAGCATACTCACCAGTTGAATTTAGATACAGTAGCTGGTGGTGATCACAAGCACGATGGTGGCGTTGCAATAAGGGCTTCATCTTCACAACCTTTTGGAAAAGCGGCCGCCCATGACGAGTTATTCTCATATGAACATCACAAATATGGTGAGGATGTTGGAACTGCTTGGACAAACACTGTTCCAGGTCATACCCACAAAGTCCAAGGTAATACTGTTGGAACTGGTGGTGGTATTGGTTTCAATACACAAAATCCATATATCGGTGTCAGTATGTGGAAAAGAACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f6b7028882b277b6d19c572ac3dec0d6154f1ac7f3850a5ea764620182faa584
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6858
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages capable of disrupting biofilms from clinical strains of Aeromonas hydrophila with intrinsic antibiotic resistance Kabwe,M., Brown,T.L., Speirs,L., Ku,H., Leach,M., Chan,H.T., Petrovski,S., Lock,P. and Tucci,J. 2020-02-14 — GenBank