Protein

View in Explore
Genbank accession
WPK37735.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,77
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MADTTQFEQAVDQVIEDSERLHKVVNGSAIDTVIVEDGSTIPTLRKALLDNVYFKTPPQPWVAGTQATVFNQLYSFTNSAGTFWWYAPGASPSTPITLPADPSTSTAWKVYNDSVVVSEKFAPLNTPAFVGSPTAPTPAQGSNSGAIATTAFVNLAVAAAINSLAGSSPSYAALTVVGASTLNTLVVSGTSQFGGTLDASGVLGKFQKISLSGQTATLSFDYTAASNYLKTIISPNSVQTNNLTSAVIVNGTASADNTTMSLTGVGNNTFDYVYIRGNSSKASTEPRLKVTGTTELENVRVTGSLSGVNVGVDGLDILPNSIATTTTAEIGSDLTVNGVTTLGSASIQNLGVVSSLTVDGNSTLTGGFTAGSASSVAGNLSITGLLAVTGAATVSTNLTVTGNANLNNGGTGTTTVNNLNVLGTLTGVSVDVNGKDINPNSVLATTTIEAYGSLKGASLVITGEATAPKVTANFVGTTPGSVTTPSAGTTWTPGGTGSDLTKMNNIYNVDVTNTLTIGPWANLGSAFTATIYLFQDATGGHAVTLDASYKIINGGTISTTANSVTILQVTYCGRGTVYDVAVYQRP
Physico‐chemical
properties
protein length:586 AA
molecular weight: 59503,34330 Da
isoelectric point:4,57550
aromaticity:0,06485
hydropathy:0,13106

Domains

Domains [InterPro]
DC_0194
STR
1–585
DC_0194
IPR058969
ATT
5–111
IPR058969 IPR058970
WPK37735.1
1 586
Architecture
ATT
STR
ATT 1-111 | STR 112-585 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV124
[NCBI] 		3077269 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK37735.1 [NCBI]
Genbank nucleotide accession
OR352954.1 [NCBI]
CDS location
range 93174 -> 94934
strand -
CDS
ATGGCTGATACAACACAATTTGAACAGGCTGTGGATCAGGTTATCGAGGATTCTGAGCGTCTCCATAAGGTGGTCAACGGATCGGCGATCGACACTGTTATTGTAGAAGATGGTAGCACGATTCCAACATTACGTAAAGCGCTTCTTGACAATGTGTATTTTAAAACACCACCACAACCTTGGGTGGCTGGTACACAGGCGACAGTTTTTAATCAACTGTATTCCTTCACCAATTCAGCAGGGACTTTCTGGTGGTATGCCCCAGGAGCGTCACCATCTACACCTATCACTTTACCTGCCGATCCGTCCACAAGCACCGCTTGGAAAGTTTATAATGACTCCGTTGTAGTTTCTGAAAAATTTGCACCTCTTAATACCCCTGCATTTGTCGGTTCTCCGACAGCGCCTACCCCTGCTCAGGGAAGTAATAGTGGTGCAATAGCGACAACTGCATTTGTCAACTTGGCTGTCGCAGCAGCGATCAATTCTCTTGCTGGGTCTTCTCCAAGTTATGCTGCTCTTACGGTGGTTGGTGCTTCAACCCTTAACACATTGGTTGTTTCTGGGACATCCCAATTTGGTGGGACGCTTGATGCCTCTGGTGTGCTTGGTAAATTCCAGAAAATTTCGTTATCTGGACAAACTGCCACTCTTTCTTTTGACTACACCGCTGCCTCTAACTATCTGAAGACTATCATATCTCCGAACTCTGTTCAAACCAATAATCTGACTTCCGCAGTTATTGTGAATGGGACAGCTAGTGCAGATAACACCACAATGTCATTAACTGGTGTCGGTAATAACACCTTCGACTATGTGTATATCCGAGGGAACTCTTCCAAGGCCTCTACGGAACCAAGACTTAAGGTAACCGGAACGACAGAACTTGAAAACGTAAGAGTAACGGGTTCGTTGTCCGGTGTCAATGTCGGTGTTGATGGCTTAGACATTCTCCCCAACTCTATTGCCACAACGACAACAGCCGAGATAGGGTCTGATCTAACTGTAAACGGTGTAACAACTCTCGGAAGTGCCTCTATTCAGAATTTAGGCGTAGTAAGTTCATTAACAGTCGATGGAAACAGCACATTAACTGGGGGATTTACAGCCGGTAGTGCTAGCTCTGTTGCAGGAAACCTCTCCATCACGGGCCTGCTTGCAGTTACTGGGGCAGCTACGGTAAGCACCAACCTTACAGTTACTGGAAACGCCAACCTTAATAATGGTGGGACAGGCACAACAACTGTAAACAATCTTAACGTACTTGGTACTCTAACGGGCGTTTCTGTTGATGTCAACGGGAAGGACATTAACCCTAACTCCGTTCTGGCAACCACCACAATAGAGGCATACGGGTCTCTAAAAGGTGCATCCCTCGTTATTACGGGTGAAGCAACGGCTCCTAAGGTCACTGCGAATTTTGTAGGAACAACCCCTGGTTCTGTTACCACACCTTCCGCAGGAACAACTTGGACACCAGGAGGGACAGGCTCTGATCTGACGAAGATGAATAACATCTACAACGTAGATGTGACAAATACTTTAACTATCGGGCCTTGGGCAAATCTTGGTAGTGCTTTTACTGCCACGATCTATCTGTTCCAGGATGCAACTGGCGGACATGCCGTCACCCTTGATGCATCTTATAAAATCATAAATGGTGGTACGATCAGCACTACTGCAAATTCAGTTACAATTCTACAAGTAACCTATTGTGGAAGAGGGACTGTCTATGATGTAGCTGTCTATCAAAGACCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a06d27efef875b6b6de0f383ec6b892e690e3c857af7046ff4022a4e73de9ca7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6216
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank