Protein

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Genbank accession
AVH85344.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MSNTLLLKRSAVPGKTPLLTDLQLGQLAINTYDGKLYTRKDNGTASIIDLGNITLSGDVTGSGSGSITLTLANSGVTAGTYKSVTVDAKGRVTAGTNPTTLAGYGITDGVNVSSLAAANGVATLDSFGKLLTSQIPASLVGAVVYQGVWNASTNSPTLTSGTGTKGNYYKVSVAGSTNIDGHSSWNIGDMIIFNGTTWDKIDGVESEVLSVFGRTGVVTMLSSDVTTALGYTPLSGNQNITLSGDATGSGATSITVTLADSGVTAGTYSSVTVDAKGRVTSGGQINSGTVTSALGYTPVQTVAGRTGNVVLTTSDVTGYGTVSDSVFSITNNSDPTKIAKFDASGISTGTTNTYTLPSVTGTLASLANISQTFTGTTTFSGTSVTVGSSTATATYGFGSGATVNGSTKTINIGTSGVSGSTTAITVGSTTSTTTIALNGAVTASTPTTADNSTLIATTAFVKNQGYAQSSALSASSGSSLVNFIASGSAAVSRTVQSVLRDTFNVRNYGAVGNGVTDDTAALNAMFAMIQSNATVVDVYFPAGNYIYSGSGLTGNAYVGRIRGDGPTASMITAASSAVTGSALTFTATADGLTLQDIGIFGPGQGAAGGQDGVVISNGGSPVRQPRFVNCEIYNWPGKALNVTTPIAGSAHNCRFQNNIHGVYLSGGTSFTFYNCYPNGNKKSGYWLNGTTYSTFNGCAADTNGIAYLLSGSTAITLVGCGNEAGTANNLTITNSSLTSNVATFTYSGPDQSADFIGNGRTVIIQGSTNIPAANAGISGLGDGRWPIASVGTNTISINLTSANISSAADTGTASFWAGDGVVINGSTIIQIQGYRTIAPAQTSSSMLVTEGSANQVTVTGMRSTQGSGSLQLVDMWLGNGTANIIRMNNAFTGGTYSAANNISTVSNGTWTLPTVTGVNALNSNGNLSLTTTASATSGTNNNSPTAFLIGTYWTGTASSQDVVAIQSKPATGANPLISLNFQHQSGSSGGMQLSVNGTPFLSGNSQFIGTSINTSGNATIGGTLSVTGVATAPTAAPGTNTTQIATTAFVQTATSSYLPLAGGTVTGAITLNAAPVVNGTAGWTTVSWNKGMRLSPSTAIEFAGPSSNHFGIGNSGGTLYFFTNTADDNSAAPNYFMTANSSGTVTYNAPVNGTFFNVSVSGAVAAAGTTQGTATALTSSVNVVTSGTGGVVLPAATGGMELVVINTTGSAINVYPASGGQIDSLGANVAFSLGAGAKLCYVATSTTQWYSLTAVYA
Physico‐chemical
properties
protein length:1257 AA
molecular weight: 125569,91670 Da
isoelectric point:5,45151
aromaticity:0,07001
hydropathy:0,10867

Domains

Domains [InterPro]
DC_0598
STR
3–300
DC_0598 DC_2184 DC_0711
IPR024535
ENZ
503–720
IPR024535
AVH85344.1
1 1257
Architecture
STR
STR
STR
STR 3-300 | STR 462-868 | STR 1024-1257
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVH85344.1
1 1257
Domain Start End Length (AA) Confidence
N-terminal 1 370 370 0,8868
Central domain 371 922 553 0,8524
C-terminal 923 1257 334 0,8277
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-370
Central
371-922
C-terminal
923-1257

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RsoM2USA
[NCBI] 		2070027 No lineage information
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVH85344.1 [NCBI]
Genbank nucleotide accession
MG752970.1 [NCBI]
CDS location
range 285114 -> 288887
strand +
CDS
ATGTCAAATACACTTCTCCTTAAGCGCTCAGCGGTTCCAGGAAAGACGCCGCTATTAACGGATTTGCAGCTAGGTCAGCTTGCTATTAACACATATGATGGCAAGCTGTATACTAGAAAAGATAATGGAACGGCATCAATTATAGATCTTGGAAACATAACTTTGTCCGGTGATGTCACTGGATCTGGATCTGGTTCAATAACATTAACGTTAGCAAACTCTGGTGTTACGGCTGGAACTTATAAATCGGTAACCGTCGATGCTAAAGGACGAGTGACGGCTGGAACTAATCCCACCACTCTTGCTGGTTATGGAATAACTGATGGCGTAAACGTTTCATCGTTGGCTGCAGCAAATGGTGTTGCTACTTTAGATTCTTTTGGAAAGCTGTTGACATCACAAATTCCTGCTTCTCTTGTTGGAGCGGTTGTTTATCAAGGGGTGTGGAATGCATCTACTAACTCTCCAACATTGACATCTGGTACTGGAACAAAGGGTAATTATTATAAAGTATCAGTAGCAGGTTCAACAAACATAGATGGCCATTCAAGTTGGAATATTGGAGATATGATTATCTTCAATGGAACGACATGGGATAAAATTGATGGAGTAGAATCTGAGGTTCTATCAGTTTTTGGTAGAACCGGTGTGGTAACGATGCTATCATCTGACGTTACCACCGCACTTGGTTATACACCACTTAGTGGAAACCAAAATATCACATTGTCAGGTGATGCTACTGGATCTGGGGCAACTTCTATCACTGTAACTCTAGCTGATTCAGGAGTAACGGCCGGAACATACTCATCAGTTACTGTTGATGCTAAAGGTAGAGTGACATCGGGTGGACAAATAAATTCAGGCACTGTTACGTCGGCTCTTGGATACACGCCTGTTCAGACAGTTGCGGGAAGAACAGGAAACGTAGTACTAACGACTAGCGATGTTACCGGTTACGGTACTGTGAGTGACTCGGTATTTTCGATTACCAACAATTCCGATCCTACAAAAATTGCGAAATTTGATGCAAGCGGTATTTCAACAGGAACAACGAACACTTATACGCTTCCATCGGTTACTGGTACTCTAGCAAGTCTCGCGAATATTTCGCAAACATTTACAGGCACCACAACATTTTCGGGTACATCCGTTACTGTGGGAAGTTCGACTGCAACCGCGACGTATGGCTTTGGATCTGGTGCTACGGTAAACGGATCTACAAAGACTATTAACATTGGTACGTCTGGTGTTTCAGGTTCTACTACTGCTATAACTGTCGGTTCAACTACGTCCACGACGACAATTGCCCTTAATGGTGCGGTAACTGCATCAACACCAACTACCGCGGATAACAGTACGCTTATAGCTACCACCGCTTTTGTTAAAAATCAGGGATATGCGCAATCATCCGCATTAAGTGCTTCGTCTGGTTCTTCACTCGTTAATTTTATCGCATCTGGATCTGCTGCAGTATCAAGAACTGTTCAATCCGTTTTGCGTGATACATTCAACGTTCGCAATTATGGTGCTGTTGGTAATGGGGTTACAGATGACACTGCTGCCCTTAATGCCATGTTTGCGATGATTCAGTCTAATGCAACTGTCGTAGACGTTTATTTCCCGGCCGGAAACTACATTTATTCAGGAAGTGGATTAACCGGTAATGCATATGTTGGAAGAATCCGTGGTGATGGTCCAACAGCATCTATGATTACTGCAGCATCAAGCGCGGTTACGGGTTCTGCACTTACATTCACTGCAACTGCCGATGGACTAACACTGCAGGATATAGGTATTTTTGGTCCGGGTCAAGGTGCTGCTGGTGGTCAAGACGGCGTGGTTATATCGAACGGTGGATCACCTGTTCGTCAGCCAAGATTTGTAAATTGCGAAATTTACAATTGGCCAGGAAAAGCATTGAATGTTACAACACCAATAGCCGGTTCTGCACATAATTGCCGCTTCCAGAATAACATTCATGGCGTATATTTGAGTGGTGGAACAAGCTTTACATTCTATAACTGCTATCCTAATGGTAATAAGAAGTCGGGATACTGGTTGAATGGTACCACATATAGCACCTTCAACGGCTGCGCGGCAGATACCAATGGTATTGCATACTTACTGTCTGGATCAACTGCTATCACCCTTGTAGGATGTGGTAATGAAGCGGGTACTGCTAATAATTTGACCATTACGAACAGTTCGCTTACGTCCAACGTTGCAACATTCACATACTCCGGTCCTGATCAATCGGCTGATTTTATAGGTAATGGTAGAACCGTGATTATTCAGGGTTCAACAAACATCCCAGCTGCCAACGCGGGTATATCTGGTCTTGGTGATGGTCGCTGGCCTATAGCATCTGTTGGTACAAATACAATTAGTATTAACTTGACAAGTGCAAACATTTCTTCAGCTGCTGATACGGGTACGGCTAGCTTCTGGGCTGGAGATGGTGTCGTTATAAACGGATCTACGATTATTCAAATTCAGGGTTACAGAACAATAGCTCCAGCACAGACAAGCAGCTCTATGCTGGTGACTGAAGGTTCTGCTAACCAGGTTACCGTGACTGGTATGCGTAGCACACAGGGAAGTGGATCTCTGCAGCTTGTTGATATGTGGTTGGGTAACGGCACTGCGAACATTATACGGATGAATAACGCATTCACCGGCGGTACTTATTCGGCTGCAAACAATATTTCGACGGTGTCAAACGGAACATGGACGCTTCCTACTGTTACAGGCGTAAATGCTTTAAACTCTAACGGAAACCTTTCTCTTACGACGACTGCTTCGGCCACATCAGGTACCAATAATAACAGTCCAACTGCTTTTCTGATTGGCACATACTGGACAGGCACCGCATCATCGCAAGATGTGGTTGCTATTCAGTCAAAGCCTGCTACCGGTGCAAATCCTTTAATTTCATTGAACTTCCAGCATCAATCTGGATCTTCAGGTGGTATGCAATTGTCGGTTAATGGAACTCCATTCTTGTCTGGAAACAGTCAGTTTATTGGTACTAGCATTAACACGTCGGGTAATGCTACTATTGGTGGCACATTGAGTGTGACTGGTGTTGCAACGGCCCCTACAGCAGCACCAGGAACTAACACCACACAAATTGCTACAACGGCATTTGTGCAAACCGCGACATCTTCATATCTGCCGCTTGCTGGTGGAACGGTTACTGGTGCTATTACGTTGAACGCGGCTCCGGTTGTAAATGGAACAGCGGGATGGACGACTGTAAGCTGGAATAAGGGAATGAGACTATCTCCATCCACTGCTATTGAATTTGCGGGTCCTTCTAGCAACCACTTTGGTATAGGTAACTCTGGCGGTACGCTGTATTTCTTCACAAACACTGCCGATGATAACTCAGCAGCTCCTAACTATTTCATGACTGCCAATAGTTCAGGAACCGTGACGTACAATGCACCGGTTAATGGTACGTTCTTTAACGTATCTGTTTCGGGTGCGGTTGCAGCAGCAGGTACTACGCAAGGAACGGCTACAGCGCTAACTTCATCGGTTAATGTGGTTACATCAGGAACAGGTGGAGTAGTTCTTCCAGCTGCAACAGGAGGAATGGAGTTGGTGGTTATCAATACTACAGGTTCTGCTATTAACGTATATCCAGCTTCAGGCGGTCAAATTGACTCGTTGGGAGCTAATGTAGCATTCTCGTTGGGAGCGGGAGCTAAATTGTGCTATGTTGCTACATCTACTACCCAATGGTATTCATTGACTGCAGTGTATGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6f8b3af6f896a6deb8aa3e2aa6fc20885793b50373859e6b511c082ed009967e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5957
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of RsoM2USA, the largest bacteriophage infecting plant pathogenic bacterium Ralstonia solanacearum Ahmad,A.A., Addy,H.S. and Huang,Q. 2021-09-27 — GenBank