Protein

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Genbank accession
YP_009619559.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRIELTDYNSDPSTTIKIYRHYYPFDVDNLPPVLVELPGDASSYTDETLILNTMVYYRISVVHNGNEVVGPLYTTMKRYYTGPQINKDRPDQILRGDNYIGRYGTLPLDTVLSLNVAKQLVPSCTVIDGIVPETIEVEKCSYHGNVLFISTVPVFHGSPEDLYNDGALLSHGDGSGILSSALYDSIATKVNQGKPITYNNYSFKFRLMTTSEYAELYVKLYPESQMGLACERVISNCNTHPFKSPVVNIGSQGETFKTVGLDGSSIDTNWTTKGPLYMVVELMNRGDMGWPNPEVSVTLADPTDRMMFCQSEIVNGRAHFFGGIYSKFNSYSSAINKHISVNLDGTDRQVHADMPVGVYNACTWVHGNKIYCLGGAKKIGSGEYTYSELYNDIQVWEDNGTQEGIWTTITNSLPFYYGASVTTYQDMKSDKKRLLYIGGYNDVVPSGKNNFATADLDTFDGTFTVYDRATFYSGGGGGPVTQYEDYFLWVGPETRTNNYTNATFSFTIPENVDDFIYTSGIKQQGTELPTTKGGKIHVWRDTIFMFSEASIDQKQGELYLYQFVPSESRWLKITVPIPGLSEDTRASISGAFHEGKLVLMLNQPWTNASYVSSFYSISLIDPIDAPIVPVTDVVVGNSRIFTTYAEVSI
Physico‐chemical
properties
protein length:649 AA
molecular weight: 72343,31930 Da
isoelectric point:4,90170
aromaticity:0,12173
hydropathy:-0,25362

Domains

Domains [InterPro]
DC_1242
ATT
1–212
DC_1242 IPR015915
IPR015915
STR
280–574
IPR015915
IPR015915
STR
291–508
IPR015915 DC_2226
YP_009619559.1
1 649
Architecture
ATT
STR
RBD
ATT 1-212 | STR 270-574 | RBD 575-649
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009619559.1
1 649
Domain Start End Length (AA) Confidence
N-terminal 1 417 417 0,2833
Central domain 418 638 222 0,4319
C-terminal 639 649 10 0,7203
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-417
Central
418-638
C-terminal
639-649

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage SL2
[NCBI] 		2041345 Uroviricota > Caudoviricetes > Chimalliviridae > Phikzvirus SL2 >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009619559.1 [NCBI]
Genbank nucleotide accession
NC_042081 [NCBI]
CDS location
range 14545 -> 16494
strand +
CDS
GTGAGAATTGAATTGACTGACTATAATTCAGATCCATCTACAACTATAAAGATTTATAGGCATTATTATCCATTTGACGTAGATAATTTGCCGCCCGTACTAGTTGAATTACCTGGTGATGCAAGTAGCTATACTGATGAGACTCTTATCCTCAATACCATGGTTTATTACAGGATATCAGTTGTACATAATGGCAATGAGGTAGTTGGTCCTTTGTACACCACAATGAAGCGGTACTACACTGGACCACAGATAAACAAAGATAGACCTGACCAGATTCTTCGTGGAGACAACTATATTGGTCGTTATGGAACCCTTCCCTTAGACACAGTGTTATCGCTGAATGTAGCGAAACAGCTAGTACCGTCATGTACAGTTATCGATGGGATCGTCCCTGAGACGATTGAGGTAGAGAAATGTAGTTATCACGGGAACGTGTTGTTCATTTCTACCGTCCCAGTTTTCCATGGTAGTCCAGAAGATCTATATAACGACGGAGCATTGTTGTCACATGGGGACGGTTCCGGTATTTTGAGTTCGGCGTTATATGATTCCATCGCAACTAAAGTCAACCAGGGTAAACCAATAACCTATAATAACTACTCATTCAAGTTTAGGCTGATGACGACTAGTGAGTATGCCGAACTCTATGTCAAGTTATATCCTGAATCACAAATGGGTCTAGCCTGTGAACGGGTTATCAGTAATTGTAACACGCATCCATTCAAATCACCGGTTGTTAATATCGGTTCTCAGGGTGAAACATTTAAGACTGTAGGTTTGGACGGCAGTTCTATAGATACTAACTGGACGACTAAAGGACCTTTATACATGGTCGTCGAGCTAATGAATCGCGGTGATATGGGCTGGCCTAATCCAGAGGTTAGTGTCACTCTTGCAGATCCGACTGATCGGATGATGTTTTGCCAATCAGAGATCGTCAATGGACGTGCCCACTTCTTTGGCGGTATCTATAGTAAGTTTAATAGTTACTCATCCGCCATTAATAAACATATTAGTGTGAATCTAGATGGAACAGATCGACAGGTACATGCCGATATGCCAGTTGGAGTGTATAACGCTTGCACCTGGGTACATGGTAATAAGATCTACTGTTTAGGTGGTGCTAAGAAGATAGGTAGTGGCGAATATACATATTCTGAACTGTATAATGACATTCAGGTATGGGAAGATAATGGTACCCAAGAAGGTATATGGACAACGATAACTAATAGTCTACCATTTTATTATGGCGCAAGCGTCACCACATACCAAGATATGAAATCAGATAAGAAACGTCTCTTGTATATTGGCGGGTATAACGATGTAGTACCATCTGGTAAAAATAACTTCGCTACGGCTGATTTGGATACATTCGATGGTACGTTCACCGTTTATGATAGGGCGACCTTCTATAGCGGTGGTGGTGGTGGACCTGTAACGCAATATGAAGATTATTTTCTTTGGGTCGGTCCAGAAACTAGAACAAATAACTATACGAATGCGACATTTAGTTTCACGATTCCCGAGAACGTAGACGACTTTATCTATACAAGTGGGATTAAACAACAAGGGACTGAATTACCCACAACCAAAGGTGGTAAGATACATGTTTGGCGTGATACGATCTTTATGTTCAGCGAGGCGTCGATTGATCAAAAGCAAGGTGAGTTATATCTATATCAATTCGTACCAAGCGAAAGCAGGTGGCTAAAAATAACTGTACCTATACCTGGATTAAGTGAAGATACCCGCGCATCTATCAGTGGTGCATTCCATGAAGGTAAGTTAGTCCTTATGTTAAATCAACCGTGGACTAATGCTTCATATGTTTCAAGTTTCTATTCCATTAGTCTAATTGATCCAATCGATGCTCCGATTGTTCCAGTAACTGATGTTGTAGTCGGTAATAGTCGAATATTCACAACATACGCCGAGGTTTCGATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a3d5d8dfd3bac4ca9cc621f8c744854104dcc7072298d8a118474fa6d9485673
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7064
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50