Protein

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Genbank accession
YP_214593.1 [GenBank]
Protein name
sericin 1 precursor-like protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,58
Protein sequence
MSQLNVDKVVSLSGGGGTAEFQLVSNGNFNFDSGTFYIDSANNRVGIGTTSPRVSLDIANTDGMIVPVGTTVQRPGSAVEGMFRYNSTDRTFEGYAHNSTTNVTEWGPIAGAGGIPTQSTSRYSDDYSVNASLKSDGTNAFWSLDGTDTDWSMARIWTHGYVGGGYRSGSPWSNVNRTVHATDTSTNLGDTLDRSGAYMSGSWNDRRHFYHSMENTYRGSSTYTSGFSMTNEAGIAHQSAWDMTVNRASMGSFQDHVFAGGYSYLHGGGNARTDVFNLTTEVMRTSGFPPDQNDGGDDPTWGGHGRLMGWWKRSGSRAGFRWANESWTSWNHGPGGDGWKKILPTMIGHMYVGTGNNAQNGNQKVDDTTGIQVRGLDFGNMGEENFEMGMRKGYCLGNYNGAQNNNTFKVNYGTDSYNNLGGSSPPTGHDGMSSAHCCSSSSISGTTTGGSVVYDYGTTIPNY
Physico‐chemical
properties
protein length:463 AA
molecular weight: 49796,28470 Da
isoelectric point:5,56848
aromaticity:0,11231
hydropathy:-0,65724

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_214593.1
1 463
Domain Start End Length (AA) Confidence
N-terminal 1 107 107 0,0630
Central domain 108 308 202 0,3813
C-terminal 309 463 154 0,6965
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-107
Central
108-308
C-terminal
309-463

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM4
[NCBI] 		268747 Uroviricota > Caudoviricetes > Pantevenvirales > Ronodorvirus > Ronodorvirus ssm4
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_214593.1 [NCBI]
Genbank nucleotide accession
NC_006884 [NCBI]
CDS location
range 31500 -> 32891
strand +
CDS
ATGTCTCAATTAAATGTTGATAAAGTTGTTTCTCTGAGTGGCGGTGGTGGTACTGCTGAGTTTCAGTTGGTTTCTAATGGAAATTTTAATTTTGACTCAGGAACTTTTTACATAGATTCTGCTAATAATCGAGTTGGTATTGGAACTACCTCACCGAGGGTAAGTCTCGATATTGCAAATACAGATGGTATGATAGTTCCTGTAGGAACTACAGTACAGAGACCAGGATCGGCAGTAGAAGGTATGTTCCGCTACAATAGTACCGATCGAACCTTTGAAGGATACGCACATAACTCTACTACAAATGTCACAGAGTGGGGACCTATTGCAGGTGCAGGTGGAATACCGACACAGAGTACAAGTAGATATAGTGATGACTATTCAGTTAATGCTTCACTTAAATCTGATGGTACAAACGCATTTTGGTCTTTAGATGGTACAGATACCGATTGGTCAATGGCAAGAATTTGGACACATGGATATGTAGGAGGAGGATATAGATCAGGGTCACCTTGGAGTAATGTTAATAGAACAGTTCATGCTACTGATACATCAACAAACTTAGGAGATACACTAGACAGATCAGGTGCATATATGTCTGGATCATGGAATGATAGGAGACACTTCTATCACTCAATGGAGAACACATACAGAGGATCATCAACATATACCTCTGGTTTTAGTATGACAAATGAAGCAGGTATAGCTCATCAATCTGCATGGGATATGACAGTAAATAGAGCATCTATGGGTTCATTCCAAGATCATGTATTTGCAGGAGGATATTCTTACTTACATGGTGGTGGTAATGCAAGAACTGACGTATTTAATCTTACAACAGAGGTCATGAGAACTTCTGGATTCCCACCTGATCAGAATGATGGTGGTGATGACCCAACATGGGGAGGACATGGTAGACTCATGGGATGGTGGAAGAGATCAGGTTCAAGAGCAGGATTTAGATGGGCAAACGAATCATGGACATCATGGAACCACGGACCAGGTGGTGATGGATGGAAGAAAATACTTCCTACTATGATCGGTCACATGTACGTTGGAACTGGTAATAACGCACAAAATGGTAATCAAAAGGTTGATGATACTACAGGCATACAGGTTAGAGGTCTTGACTTTGGTAATATGGGTGAAGAAAACTTTGAAATGGGTATGAGAAAGGGATACTGTTTAGGAAACTACAATGGTGCTCAGAACAATAATACCTTCAAGGTGAACTATGGAACCGATTCATATAATAATCTTGGTGGATCATCACCCCCAACTGGTCACGATGGTATGAGTTCTGCTCACTGTTGTTCATCCAGTTCAATATCTGGTACAACTACTGGTGGTTCAGTAGTGTATGACTACGGTACAACTATTCCTAATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0f703fc7e1c5a370310cba5583e2e7a68c01a43a09a6ba3ee99685903f6f69a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3653
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50